sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4cgp	MYA	Glycylpeptide N-tetradecanoyltransferase

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
4cgp	MYA	Glycylpeptide N-tetradecanoyltransferase	/	1.000
5ag7	MYA	Glycylpeptide N-tetradecanoyltransferase	/	0.656
4a32	MYA	Glycylpeptide N-tetradecanoyltransferase	/	0.621
5a27	MYA	Glycylpeptide N-tetradecanoyltransferase	/	0.604
4a2z	MYA	Glycylpeptide N-tetradecanoyltransferase	/	0.600
4a30	MYA	Glycylpeptide N-tetradecanoyltransferase	/	0.600
5ag6	MYA	Glycylpeptide N-tetradecanoyltransferase	/	0.547
2yne	NHW	Glycylpeptide N-tetradecanoyltransferase	/	0.545
4b14	NHW	Glycylpeptide N-tetradecanoyltransferase	/	0.543
4b10	NHW	Glycylpeptide N-tetradecanoyltransferase	/	0.534
4b12	NHW	Glycylpeptide N-tetradecanoyltransferase	/	0.525
5ag5	MYA	Glycylpeptide N-tetradecanoyltransferase	/	0.506
4c2x	NHW	Glycylpeptide N-tetradecanoyltransferase 2	/	0.491
4b13	NHW	Glycylpeptide N-tetradecanoyltransferase	/	0.480
4a33	MYA	Glycylpeptide N-tetradecanoyltransferase	/	0.453