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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cf7ADPAdenylate kinase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4cf7ADPAdenylate kinase/1.000
4jldADPAdenylate kinase/0.582
4jkyADPAdenylate kinase/0.566
4jl5ADPAdenylate kinase/0.552
4jloADPAdenylate kinase/0.548
4jl6ADPAdenylate kinase/0.511
4w5jAP5Adenylate kinase/0.496
2osbAP5Adenylate kinase/0.485
4mkhAP5Adenylate kinase/0.465
4qbiAP5Adenylate kinase/0.451
4ikeADPAdenylate kinase/0.447
2oo7AP5Adenylate kinase/0.444
3phiNDPShikimate dehydrogenase (NADP(+))/0.444
2qajAP5Adenylate kinase/0.440