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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4caxMYAGlycylpeptide N-tetradecanoyltransferase2.3.1.97

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4caxMYAGlycylpeptide N-tetradecanoyltransferase2.3.1.971.000
4qbjNHMGlycylpeptide N-tetradecanoyltransferase2.3.1.970.586
2nmtNHMGlycylpeptide N-tetradecanoyltransferase2.3.1.970.558
4c2yMYAGlycylpeptide N-tetradecanoyltransferase 1/0.551
4ucnMYAGlycylpeptide N-tetradecanoyltransferase/0.548
4a33MYAGlycylpeptide N-tetradecanoyltransferase/0.546
4c2xNHWGlycylpeptide N-tetradecanoyltransferase 2/0.541
4c2zMYAGlycylpeptide N-tetradecanoyltransferase 1/0.540
1iidNHMGlycylpeptide N-tetradecanoyltransferase2.3.1.970.533
4b13NHWGlycylpeptide N-tetradecanoyltransferase/0.533
2yncYNCGlycylpeptide N-tetradecanoyltransferase/0.529
4cavMYAGlycylpeptide N-tetradecanoyltransferase2.3.1.970.524
4a95NHWGlycylpeptide N-tetradecanoyltransferase/0.523
4bbhNHWGlycylpeptide N-tetradecanoyltransferase/0.523
4cgpMYAGlycylpeptide N-tetradecanoyltransferase/0.522
5a27MYAGlycylpeptide N-tetradecanoyltransferase/0.520
4a32MYAGlycylpeptide N-tetradecanoyltransferase/0.518
4a2zMYAGlycylpeptide N-tetradecanoyltransferase/0.517
5ag7MYAGlycylpeptide N-tetradecanoyltransferase/0.516
5ag6MYAGlycylpeptide N-tetradecanoyltransferase/0.512
4a30MYAGlycylpeptide N-tetradecanoyltransferase/0.505
4b11NHWGlycylpeptide N-tetradecanoyltransferase/0.502
4b12NHWGlycylpeptide N-tetradecanoyltransferase/0.501
4c68NHWGlycylpeptide N-tetradecanoyltransferase/0.501
2yneNHWGlycylpeptide N-tetradecanoyltransferase/0.495
4b10NHWGlycylpeptide N-tetradecanoyltransferase/0.489
4b14NHWGlycylpeptide N-tetradecanoyltransferase/0.484
4a31MYAGlycylpeptide N-tetradecanoyltransferase/0.465
2wuuNHWGlycylpeptide N-tetradecanoyltransferase/0.461
3tqhNDPQuinone oxidoreductase/0.461
4iarERM5-hydroxytryptamine receptor 1B/0.458
2y0mACOHistone acetyltransferase KAT8/0.453
4geb0LDKynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.443
3bhiNAPCarbonyl reductase [NADPH] 11.1.1.1840.440