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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4c2yMYAGlycylpeptide N-tetradecanoyltransferase 1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4c2yMYAGlycylpeptide N-tetradecanoyltransferase 1/1.000
2yneNHWGlycylpeptide N-tetradecanoyltransferase/0.694
4c2xNHWGlycylpeptide N-tetradecanoyltransferase 2/0.638
4b13NHWGlycylpeptide N-tetradecanoyltransferase/0.634
4c2zMYAGlycylpeptide N-tetradecanoyltransferase 1/0.634
4a95NHWGlycylpeptide N-tetradecanoyltransferase/0.631
2yncYNCGlycylpeptide N-tetradecanoyltransferase/0.629
4b12NHWGlycylpeptide N-tetradecanoyltransferase/0.625
4b11NHWGlycylpeptide N-tetradecanoyltransferase/0.621
4b14NHWGlycylpeptide N-tetradecanoyltransferase/0.621
4ucnMYAGlycylpeptide N-tetradecanoyltransferase/0.620
4b10NHWGlycylpeptide N-tetradecanoyltransferase/0.616
4bbhNHWGlycylpeptide N-tetradecanoyltransferase/0.611
4a33MYAGlycylpeptide N-tetradecanoyltransferase/0.607
4cgpMYAGlycylpeptide N-tetradecanoyltransferase/0.602
5ag6MYAGlycylpeptide N-tetradecanoyltransferase/0.598
4c68NHWGlycylpeptide N-tetradecanoyltransferase/0.597
4a30MYAGlycylpeptide N-tetradecanoyltransferase/0.594
5a27MYAGlycylpeptide N-tetradecanoyltransferase/0.591
4a2zMYAGlycylpeptide N-tetradecanoyltransferase/0.585
5ag7MYAGlycylpeptide N-tetradecanoyltransferase/0.585
2wsaMYAGlycylpeptide N-tetradecanoyltransferase/0.559
1iidNHMGlycylpeptide N-tetradecanoyltransferase2.3.1.970.506
4a32MYAGlycylpeptide N-tetradecanoyltransferase/0.473
4caxMYAGlycylpeptide N-tetradecanoyltransferase2.3.1.970.455