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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4bibIEOMitogen-activated protein kinase kinase kinase 52.7.11.25

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4bibIEOMitogen-activated protein kinase kinase kinase 52.7.11.251.000
4bidIE8Mitogen-activated protein kinase kinase kinase 52.7.11.250.579
4bf2STUMitogen-activated protein kinase kinase kinase 52.7.11.250.496
2clqSTUMitogen-activated protein kinase kinase kinase 52.7.11.250.487
1qpjSTUTyrosine-protein kinase Lck2.7.10.20.486
4yzcSTUSerine/threonine-protein kinase/endoribonuclease IRE12.7.11.10.474
2x2lX2LProto-oncogene tyrosine-protein kinase receptor Ret2.7.10.10.468
3i4bZ48Glycogen synthase kinase-3 beta2.7.11.260.467
3zc6VFCTyrosine-protein kinase JAK32.7.10.20.467
4aqc88ATyrosine-protein kinase JAK2/0.465
5dr9SKEAurora kinase A2.7.11.10.465
4jia1K3Tyrosine-protein kinase JAK2/0.463
2pvhP19Casein kinase II subunit alpha2.7.11.10.461
4ks8B49Serine/threonine-protein kinase PAK 62.7.11.10.461
3nynSGVG protein-coupled receptor kinase 62.7.11.160.459
4jbpYPHAurora kinase A2.7.11.10.457
4jboWPHAurora kinase A2.7.11.10.454
4anmWULCasein kinase II subunit alpha2.7.11.10.453
4f081RSTyrosine-protein kinase JAK2/0.453
1fvv107Cyclin-dependent kinase 22.7.11.220.452
2ckeIQUDeath-associated protein kinase 2/0.452
2vu3LZECyclin-dependent kinase 22.7.11.220.449
3cblSTUTyrosine-protein kinase Fes/Fps2.7.10.20.449
5av2KMPDeath-associated protein kinase 12.7.11.10.448
3w2sW2REpidermal growth factor receptor2.7.10.10.445
4deeADPAurora kinase A2.7.11.10.443
5dnrATPAurora kinase A2.7.11.10.443
5dt0SKEAurora kinase A2.7.11.10.442
4bieIE6Mitogen-activated protein kinase kinase kinase 52.7.11.250.441
4o0wADNAurora kinase A2.7.11.10.441
4jajXU1Aurora kinase A2.7.11.10.440