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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4bfwZVWPantothenate kinase2.7.1.33

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4bfwZVWPantothenate kinase2.7.1.331.000
4bfvZVVPantothenate kinase2.7.1.330.617
3af0GDPPantothenate kinase2.7.1.330.588
4bfsZVSPantothenate kinase2.7.1.330.572
4bfxZVXPantothenate kinase2.7.1.330.568
4bftZVTPantothenate kinase2.7.1.330.565
2zs9ADPPantothenate kinase2.7.1.330.551
2zs8ADPPantothenate kinase2.7.1.330.550
2gevCOKPantothenate kinase2.7.1.330.548
3af1GDPPantothenate kinase2.7.1.330.548
4bfuZVUPantothenate kinase2.7.1.330.539
4bfzZVZPantothenate kinase2.7.1.330.530
2zsdCOAPantothenate kinase2.7.1.330.513
3af3GCPPantothenate kinase2.7.1.330.510
2getCOKPantothenate kinase2.7.1.330.505
2zseACPPantothenate kinase2.7.1.330.494
2geuCOKPantothenate kinase2.7.1.330.489
2gesCOKPantothenate kinase2.7.1.330.485
3af2ACPPantothenate kinase2.7.1.330.481
2zsbADPPantothenate kinase2.7.1.330.467
3aezGDPPantothenate kinase2.7.1.330.453