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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4b754VAGenome polyprotein3.4.21.98

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4b754VAGenome polyprotein3.4.21.981.000
4b71DJLGenome polyprotein3.4.21.980.622
4b734VAGenome polyprotein3.4.21.980.617
4b741LHGenome polyprotein3.4.21.980.571
4b76PW1Genome polyprotein3.4.21.980.541
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.442