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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4az29MUProthrombin3.4.21.5

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4az29MUProthrombin3.4.21.51.000
4ayv9MQProthrombin3.4.21.50.579
4ayy9MXProthrombin3.4.21.50.536
2bvs2CEProthrombin3.4.21.50.517
1c4yIH3Prothrombin3.4.21.50.511
2jh5895Prothrombin3.4.21.50.500
4e7r0NWProthrombin3.4.21.50.494
4rn615UProthrombin3.4.21.50.494
1ypjUIBProthrombin3.4.21.50.493
2v3oI26Prothrombin3.4.21.50.493
4ax9N5NProthrombin3.4.21.50.491
1d9i00PProthrombin3.4.21.50.488
1zgi382Prothrombin3.4.21.50.487
1d6w00RProthrombin3.4.21.50.484
1riwOSCProthrombin3.4.21.50.479
2zfr46UProthrombin3.4.21.50.479
2gdeSN3Prothrombin3.4.21.50.476
2jh6894Prothrombin3.4.21.50.475
1w7gMIUProthrombin3.4.21.50.474
1d4pBPPProthrombin3.4.21.50.472
1ypgUIRProthrombin3.4.21.50.472
1mu6CDAProthrombin3.4.21.50.469
1xm1GAHProthrombin3.4.21.50.466
1ta6177Prothrombin3.4.21.50.465
1d3pBT3Prothrombin3.4.21.50.460
1bcuPRLProthrombin3.4.21.50.459
2zi224UProthrombin3.4.21.50.457
2jh0701Prothrombin3.4.21.50.456
1o5gCR9Prothrombin3.4.21.50.454
1ypeUIPProthrombin3.4.21.50.454
1umaIN2Prothrombin3.4.21.50.447
1yplRA8Prothrombin3.4.21.50.445
2anmCDOProthrombin3.4.21.50.444