Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
4ayv | 9MQ | Prothrombin | 3.4.21.5 |
PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
---|---|---|---|---|---|
4ayv | 9MQ | Prothrombin | 3.4.21.5 | 1.000 | |
4az2 | 9MU | Prothrombin | 3.4.21.5 | 0.687 | |
2bvs | 2CE | Prothrombin | 3.4.21.5 | 0.602 | |
4ayy | 9MX | Prothrombin | 3.4.21.5 | 0.598 | |
1uma | IN2 | Prothrombin | 3.4.21.5 | 0.576 | |
1ypg | UIR | Prothrombin | 3.4.21.5 | 0.575 | |
2jh5 | 895 | Prothrombin | 3.4.21.5 | 0.575 | |
1d6w | 00R | Prothrombin | 3.4.21.5 | 0.571 | |
1ypj | UIB | Prothrombin | 3.4.21.5 | 0.569 | |
2gde | SN3 | Prothrombin | 3.4.21.5 | 0.566 | |
1o5g | CR9 | Prothrombin | 3.4.21.5 | 0.565 | |
2v3o | I26 | Prothrombin | 3.4.21.5 | 0.560 | |
1d9i | 00P | Prothrombin | 3.4.21.5 | 0.556 | |
2cf8 | ESH | Prothrombin | 3.4.21.5 | 0.552 | |
1d4p | BPP | Prothrombin | 3.4.21.5 | 0.548 | |
4ax9 | N5N | Prothrombin | 3.4.21.5 | 0.546 | |
1c4y | IH3 | Prothrombin | 3.4.21.5 | 0.544 | |
2zi2 | 24U | Prothrombin | 3.4.21.5 | 0.541 | |
1z71 | L17 | Prothrombin | 3.4.21.5 | 0.539 | |
2jh6 | 894 | Prothrombin | 3.4.21.5 | 0.537 | |
1o2g | 696 | Prothrombin | 3.4.21.5 | 0.533 | |
2cf9 | 348 | Prothrombin | 3.4.21.5 | 0.532 | |
1ype | UIP | Prothrombin | 3.4.21.5 | 0.530 | |
2jh0 | 701 | Prothrombin | 3.4.21.5 | 0.530 | |
1gj5 | 130 | Prothrombin | 3.4.21.5 | 0.528 | |
2cn0 | F25 | Prothrombin | 3.4.21.5 | 0.526 | |
1oyt | FSN | Prothrombin | 3.4.21.5 | 0.524 | |
1mu6 | CDA | Prothrombin | 3.4.21.5 | 0.523 | |
3c1k | T15 | Prothrombin | 3.4.21.5 | 0.523 | |
1nm6 | L86 | Prothrombin | 3.4.21.5 | 0.517 | |
1xm1 | GAH | Prothrombin | 3.4.21.5 | 0.516 | |
4e7r | 0NW | Prothrombin | 3.4.21.5 | 0.516 | |
1zgi | 382 | Prothrombin | 3.4.21.5 | 0.515 | |
1riw | OSC | Prothrombin | 3.4.21.5 | 0.514 | |
1ta6 | 177 | Prothrombin | 3.4.21.5 | 0.513 | |
1ypl | RA8 | Prothrombin | 3.4.21.5 | 0.512 | |
2anm | CDO | Prothrombin | 3.4.21.5 | 0.509 | |
1bcu | PRL | Prothrombin | 3.4.21.5 | 0.505 | |
1d3p | BT3 | Prothrombin | 3.4.21.5 | 0.505 | |
2zfr | 46U | Prothrombin | 3.4.21.5 | 0.505 | |
1t4u | 81A | Prothrombin | 3.4.21.5 | 0.504 | |
2zc9 | 22U | Prothrombin | 3.4.21.5 | 0.494 | |
3hat | GLY_VAL_ARG_RNG | Prothrombin | 3.4.21.5 | 0.493 | |
4rn6 | 15U | Prothrombin | 3.4.21.5 | 0.492 | |
2zda | 32U | Prothrombin | 3.4.21.5 | 0.489 | |
4n3l | 2FN | Prothrombin | 3.4.21.5 | 0.486 | |
1c4u | IH1 | Prothrombin | 3.4.21.5 | 0.485 | |
1w7g | MIU | Prothrombin | 3.4.21.5 | 0.485 | |
4lxb | 7R9 | Prothrombin | 3.4.21.5 | 0.484 | |
2uuk | 897 | Prothrombin | 3.4.21.5 | 0.479 | |
3qwc | 98P | Prothrombin | 3.4.21.5 | 0.478 | |
1c1w | BAH | Prothrombin | 3.4.21.5 | 0.473 | |
2r2m | I50 | Prothrombin | 3.4.21.5 | 0.472 | |
1t4v | 14A | Prothrombin | 3.4.21.5 | 0.470 | |
2zfq | 45U | Prothrombin | 3.4.21.5 | 0.470 | |
1ypk | CCR | Prothrombin | 3.4.21.5 | 0.466 | |
1ypm | RA4 | Prothrombin | 3.4.21.5 | 0.463 | |
4hfp | 15U | Prothrombin | 3.4.21.5 | 0.463 | |
2a2x | NA9 | Prothrombin | 3.4.21.5 | 0.462 | |
1jwt | BLI | Prothrombin | 3.4.21.5 | 0.460 | |
2zhf | 49U | Prothrombin | 3.4.21.5 | 0.460 | |
1d3d | BZT | Prothrombin | 3.4.21.5 | 0.459 | |
1ghv | 120 | Prothrombin | 3.4.21.5 | 0.456 | |
1uvs | I11 | Prothrombin | 3.4.21.5 | 0.456 | |
1gj4 | 132 | Prothrombin | 3.4.21.5 | 0.455 | |
5cmx | 0G6 | Prothrombin | 3.4.21.5 | 0.452 | |
3dhk | 23U | Prothrombin | 3.4.21.5 | 0.451 | |
1a4w | QWE | Prothrombin | 3.4.21.5 | 0.447 | |
2zhe | 13U | Prothrombin | 3.4.21.5 | 0.444 | |
1sb1 | 165 | Prothrombin | 3.4.21.5 | 0.442 |