sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4asj	N6A	Glucose-1-phosphate thymidylyltransferase

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
4asj	N6A	Glucose-1-phosphate thymidylyltransferase	/	1.000
4b5b	BBE	Glucose-1-phosphate thymidylyltransferase	/	0.640
4b4g	KKT	Glucose-1-phosphate thymidylyltransferase	/	0.621
4b2w	BZ0	Glucose-1-phosphate thymidylyltransferase	/	0.587
4b42	942	Glucose-1-phosphate thymidylyltransferase	/	0.563
4b4b	GJB	Glucose-1-phosphate thymidylyltransferase	/	0.544
4asy	N5Y	Glucose-1-phosphate thymidylyltransferase	/	0.448
1kbq	FAD	NAD(P)H dehydrogenase [quinone] 1	1.6.5.2	0.447