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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4aqlTXCGuanine deaminase3.5.4.3

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4aqlTXCGuanine deaminase3.5.4.31.000
4fnyI3KALK tyrosine kinase receptor2.7.10.10.443
2b365PPEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.442
3nrrD16Bifunctional dihydrofolate reductase-thymidylate synthase/0.441
4bchT7ZCyclin-dependent kinase 92.7.11.220.440