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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4a802ANMajor pollen allergen Bet v 1-A

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4a802ANMajor pollen allergen Bet v 1-A/1.000
4a87NARMajor pollen allergen Bet v 1-A/0.764
4a862ANMajor pollen allergen Bet v 1-A/0.763
4a86H35Major pollen allergen Bet v 1-A/0.709
4a81DXCMajor pollen allergen Bet v 1-A/0.686
4a8v2ANMajor pollen allergen Bet v 1-J/0.640
1fm4DXCMajor pollen allergen Bet v 1-L/0.558
4a83DXCMajor pollen allergen Bet v 1-A/0.529
4a84DXCMajor pollen allergen Bet v 1-A/0.518