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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4a30QMIGlycylpeptide N-tetradecanoyltransferase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4a30QMIGlycylpeptide N-tetradecanoyltransferase/1.000
4a2zVIQGlycylpeptide N-tetradecanoyltransferase/0.758
4a30MYAGlycylpeptide N-tetradecanoyltransferase/0.673
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.659
4cax646Glycylpeptide N-tetradecanoyltransferase2.3.1.970.613
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.593
2wsa646Glycylpeptide N-tetradecanoyltransferase/0.579
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.551
4bbhYBNGlycylpeptide N-tetradecanoyltransferase/0.542
4b144XBGlycylpeptide N-tetradecanoyltransferase/0.528
5ag7MYAGlycylpeptide N-tetradecanoyltransferase/0.517
4b13X25Glycylpeptide N-tetradecanoyltransferase/0.516
4c2z646Glycylpeptide N-tetradecanoyltransferase 1/0.489
2yneYNEGlycylpeptide N-tetradecanoyltransferase/0.483
4b117I1Glycylpeptide N-tetradecanoyltransferase/0.468
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.443