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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zxtACPDeath-associated protein kinase 12.7.11.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3zxtACPDeath-associated protein kinase 12.7.11.11.000
3gu7ADPDeath-associated protein kinase 12.7.11.10.476
2w4jADPDeath-associated protein kinase 12.7.11.10.470
5av2KMPDeath-associated protein kinase 12.7.11.10.465
5av3KMPDeath-associated protein kinase 12.7.11.10.463
3bqr4RBDeath-associated protein kinase 3/0.462
1jkkANPDeath-associated protein kinase 12.7.11.10.457
2ckeIQUDeath-associated protein kinase 2/0.456
1jklANPDeath-associated protein kinase 12.7.11.10.455
2yaaATPDeath-associated protein kinase 2/0.447
5eg3ACPFibroblast growth factor receptor 2/0.446
2vn9GVDCalcium/calmodulin-dependent protein kinase type II subunit delta2.7.11.170.442