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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zcbATPAdenosine monophosphate-protein transferase VbhT2.7.7.n1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3zcbATPAdenosine monophosphate-protein transferase VbhT2.7.7.n11.000
3otwCOAPhosphopantetheine adenylyltransferase/0.451
3zlmANPAdenosine monophosphate-protein transferase NmFic2.7.7.n10.451
3ld6BCDLanosterol 14-alpha demethylase1.14.13.700.450
3jusBCDLanosterol 14-alpha demethylase1.14.13.700.449
1tqf32PBeta-secretase 13.4.23.460.444
1x2hLPALipoate-protein ligase A6.3.1.200.442
3hk1B64Fatty acid-binding protein, adipocyte/0.441
4e2dFMNDehydrogenase/0.441
4n3l2FNProthrombin3.4.21.50.441