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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3x2vATPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.11

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3x2vATPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.111.000
3x2wATPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.617
4iacACPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.601
4iakADPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.585
4xw4ANPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.575
3idbANPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.543
3x2uATPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.542
3o7lANPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.509
4iayADPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.494
4ekkANPRAC-alpha serine/threonine-protein kinase2.7.11.10.481
3idcANPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.474
4dg3ANPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.474
1qmzATPCyclin-dependent kinase 22.7.11.220.470
1jbpADPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.463
3e8cG96cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.462
3dndLL2cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.461
4iazADPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.461
4dh5ADPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.459
2gu8796cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.456
4ysjADPCalmodulin-like domain protein kinase/0.449
2uzwSS4cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.446
2c1bCQPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.444
5kghACOPredicted acetyltransferase/0.444
3qw4U5POrotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative/0.443
2uzuL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.440
4wbbADPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.440