sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3wds | NAD | NADH-dependent quinuclidinone reductase |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 3wds | NAD | NADH-dependent quinuclidinone reductase | / | 1.000 | |
| 3ak4 | NAD | NADH-dependent quinuclidinone reductase | / | 0.608 | |
| 4gh5 | NAD | Short-chain dehydrogenase/reductase SDR | / | 0.501 | |
| 2dte | NAI | Glucose 1-dehydrogenase related protein | / | 0.487 | |
| 3sju | NDP | Keto reductase | / | 0.477 | |
| 5js6 | NAD | 17-beta-hydroxysteroid dehydrogenase 14 | 1.1.1 | 0.473 | |
| 5jla | NAD | Putative short-chain dehydrogenase/reductase | / | 0.466 | |
| 1x7h | NDP | Putative ketoacyl reductase | 1.3.1 | 0.465 | |
| 1w4z | NAP | Putative ketoacyl reductase | 1.3.1 | 0.456 | |
| 4i5e | NAP | Alclohol dehydrogenase/short-chain dehydrogenase | / | 0.455 | |
| 4fw8 | NAI | 3-oxoacyl-(Acyl-carrier-protein) reductase | / | 0.454 | |
| 2gdz | NAD | 15-hydroxyprostaglandin dehydrogenase [NAD(+)] | 1.1.1.141 | 0.451 | |
| 1edo | NAP | 3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic | 1.1.1.100 | 0.446 | |
| 2dkn | NAI | 3-alpha-hydroxysteroid dehydrogenase | / | 0.446 | |
| 5jsf | NAD | 17-beta-hydroxysteroid dehydrogenase 14 | 1.1.1 | 0.443 |