Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3wd2A1LChitinase B3.2.1.14

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3wd2A1LChitinase B3.2.1.141.000
3wd4A1LChitinase B3.2.1.140.708
3wd3A1LChitinase B3.2.1.140.685
3wd1ST7Chitinase B3.2.1.140.637
1o6i0HZChitinase B3.2.1.140.557
1w1pGIOChitinase/0.525
1e6zNGOChitinase/0.486
3arwCTIChitinase A/0.458