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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3w5uFADFerredoxin

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3w5uFADFerredoxin/1.000
1gaqFADFerredoxin/0.597
4af7FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.503
4y9uFADNADPH--cytochrome P450 reductase/0.490
3vo2FADFerredoxin--NADP reductase/0.480
4c43FADFerredoxin--NADP reductase1.18.1.20.479
1gawFADFerredoxin/0.477
3mhpFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.475
3qfsFADNADPH--cytochrome P450 reductase/0.475
1gjrFADFerredoxin--NADP reductase1.18.1.20.473
2bpoFADNADPH--cytochrome P450 reductase/0.473
1bx1FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.472
4y7cFADNADPH--cytochrome P450 reductase/0.471
1tllFADNitric oxide synthase, brain1.14.13.390.470
1qgyFADFerredoxin--NADP reductase1.18.1.20.466
1bjkFADFerredoxin--NADP reductase1.18.1.20.463
1ja1FADNADPH--cytochrome P450 reductase/0.462
4b7754MBeta-secretase 13.4.23.460.457
1fnbFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.456
3zc3FADFerredoxin--NADP reductase1.18.1.20.453
1fncFDAFerredoxin--NADP reductase, chloroplastic1.18.1.20.452
1h85FADFerredoxin--NADP reductase1.18.1.20.452
2bf4FADNADPH--cytochrome P450 reductase/0.452
2rc6FADFerredoxin--NADP reductase/0.452
1qh0FADFerredoxin--NADP reductase1.18.1.20.450
1sm4FADFerredoxin--NADP reductase/0.449
1e64FADFerredoxin--NADP reductase1.18.1.20.448
3qe2FADNADPH--cytochrome P450 reductase/0.448
1w35FADFerredoxin--NADP reductase1.18.1.20.445
3fpkFADFerredoxin-NADP reductase/0.445
1amoFADNADPH--cytochrome P450 reductase/0.444
1gvhFADFlavohemoprotein/0.444
1ewyFADFerredoxin--NADP reductase1.18.1.20.441
4acxS8ZBeta-secretase 13.4.23.460.440
4af6FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.440