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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vtkADPThymidine kinase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3vtkADPThymidine kinase/1.000
1p7cT5AThymidine kinase/0.528
2vp4DCPDeoxynucleoside kinase/0.472
2vp2DGTDeoxynucleoside kinase/0.471
2jasDTPDeoxyguanosine kinase/0.470
2jcsTTPDeoxynucleoside kinase/0.466
1oe0TTPDeoxynucleoside kinase/0.461
1e2jTHMThymidine kinase/0.450
2vp0TTPDeoxynucleoside kinase/0.442
1zm7TTPDeoxynucleoside kinase/0.440