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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vt8YI3Vitamin D3 receptor

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3vt8YI3Vitamin D3 receptor/1.000
3vt9YI4Vitamin D3 receptor/0.670
3vt7VDXVitamin D3 receptor/0.626
2zlcVDXVitamin D3 receptor/0.481
3vt5YI2Vitamin D3 receptor/0.477
3vt65YIVitamin D3 receptor/0.471
1rkhVD2Vitamin D3 receptor/0.460
1txiTX5Vitamin D3 receptor/0.460
1s19MC9Vitamin D3 receptor/0.456
2zlaVDBVitamin D3 receptor/0.456
1rkgVD1Vitamin D3 receptor/0.453
2harOCCVitamin D3 receptor/0.453
2o4rVD5Vitamin D3 receptor/0.453
4ia3BIVVitamin D3 receptor A/0.453
4fhi0S4Vitamin D3 receptor A/0.452
4ia7BIVVitamin D3 receptor A/0.452
3kpzZNEVitamin D3 receptor/0.450
4fhh0U3Vitamin D3 receptor A/0.449
1rk3VDXVitamin D3 receptor/0.448
4g1d0VKVitamin D3 receptor A/0.446
2hc4VDXVitamin D3 receptor A/0.444
2hcdBIVVitamin D3 receptor A/0.444
3vrvYSDVitamin D3 receptor/0.443
3vrwYS5Vitamin D3 receptor/0.443
1db1VDXVitamin D3 receptor/0.442
4g1y0VOVitamin D3 receptor A/0.442
4g2h0VQVitamin D3 receptor A/0.442
2hasC3OVitamin D3 receptor/0.441
2hb7O1CVitamin D3 receptor/0.440
4ia2BIVVitamin D3 receptor A/0.440