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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vf60H6Glucokinase2.7.1.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3vf60H6Glucokinase2.7.1.21.000
4dhyS41Glucokinase2.7.1.20.543
3s41S41Glucokinase2.7.1.20.533
4ixc1JDGlucokinase2.7.1.20.528
4iwv1J9Glucokinase2.7.1.20.517
3vev0H4Glucokinase2.7.1.20.508
3h1vTK1Glucokinase2.7.1.20.500
4bfyZVYPantothenate kinase2.7.1.330.469
4dch4DCGlucokinase2.7.1.20.460
5dp2NAPCurF/0.457
3o4rNAPDehydrogenase/reductase SDR family member 41.1.1.1840.452
3elePLPAminotransferase/0.448
5ab7MLCNonspecific lipid-transfer protein, putative/0.448
4gz612VUDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit/0.446
5ab6CAANonspecific lipid-transfer protein, putative/0.446
3vjcZGASqualene synthase2.5.1.210.444
4ead0NPThymidine phosphorylase2.4.2.40.442
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.441
2qd4CHDFerrochelatase, mitochondrial4.99.1.10.441
3l0lHC3Nuclear receptor ROR-gamma/0.441
1yc2NADNAD-dependent protein deacylase 2/0.440