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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vey0H5Glucokinase2.7.1.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3vey0H5Glucokinase2.7.1.21.000
4mleVO1Glucokinase2.7.1.20.652
3fr0AJBGlucokinase2.7.1.20.532
3h1vTK1Glucokinase2.7.1.20.530
3f9mMRKGlucokinase2.7.1.20.498
3id8MRKGlucokinase2.7.1.20.495
1v4sMRKGlucokinase2.7.1.20.485
3a0iAJIGlucokinase2.7.1.20.483
4mlhVO2Glucokinase2.7.1.20.479
4l3q926Glucokinase2.7.1.20.459