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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/1.000
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.744
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.692
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.672
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.657
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.652
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.646
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.624
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.615
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.611
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.610
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.602
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.601
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.596
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.585
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.583
4zvnFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.581
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.579
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.579
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.575
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.563
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.561
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.559
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.557
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.553
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.552
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.548
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.538
4qoeFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.512
1qr2FADRibosyldihydronicotinamide dehydrogenase [quinone]/0.503
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.501
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.500
3ielU5PRibonuclease TTHA02523.10.468
2op18PCEnoyl-ACP reductase/0.457
2po7CHDFerrochelatase, mitochondrial4.99.1.10.455
4imoPWZProstaglandin-H2 D-isomerase5.3.99.20.453
4pkl1GHUncharacterized protein/0.452
4a30QMIGlycylpeptide N-tetradecanoyltransferase/0.451
2yfeYFEPeroxisome proliferator-activated receptor gamma/0.447
1ay0TPPTransketolase 12.2.1.10.446
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.446
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.446
2ojg19AMitogen-activated protein kinase 12.7.11.240.444
2wsa646Glycylpeptide N-tetradecanoyltransferase/0.443
2aqhNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.441
4em9TCEPeroxisome proliferator-activated receptor gamma/0.441
4wo5324Serine/threonine-protein kinase B-raf2.7.11.10.440