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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3upkUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3upkUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/1.000
3swqEPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.749
3v4tUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.640
2rl1UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.592
1q3gUDAUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.581
3vcyUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.579
1rywEPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.560
3issEPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.560
4r7uUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.549
3kqjUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.543
3kr6UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.543
1uaeUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.519
2yvwEPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.510
3lthUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.477
1a2nTETUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.466