sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3ue6 | FMN | Aureochrome1 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 3ue6 | FMN | Aureochrome1 | / | 1.000 | |
| 2z6d | FMN | Phototropin-2 | 2.7.11.1 | 0.539 | |
| 3t50 | FMN | Blue-light-activated histidine kinase | 2.7.13.3 | 0.523 | |
| 4wuj | FMN | Glycoside hydrolase family 15, cellulose signaling associated protein envoy | / | 0.512 | |
| 2pr5 | FMN | Blue-light photoreceptor | / | 0.510 | |
| 4hhd | FMN | Phototropin-1 | 2.7.11.1 | 0.492 | |
| 4eet | FMN | Phototropin-2 | 2.7.11.1 | 0.484 | |
| 4eer | FMN | Phototropin-2 | 2.7.11.1 | 0.483 | |
| 5dkk | FMN | Predicted protein | / | 0.481 | |
| 3p7n | FMN | Light-activated DNA-binding protein EL222 | / | 0.472 | |
| 3is2 | FAD | Vivid PAS protein VVD | / | 0.468 | |
| 1n9n | FMN | Putative blue light receptor | / | 0.457 | |
| 1qbg | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.456 | |
| 5djt | FMN | NPH1-2 | / | 0.453 | |
| 4eep | FMN | Phototropin-2 | 2.7.11.1 | 0.444 |