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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3u4r08FGenome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3u4r08FGenome polyprotein2.7.7.481.000
4mk928RGenome polyprotein2.7.7.480.578
3u4o08EGenome polyprotein2.7.7.480.567
3tyvHI3Genome polyprotein2.7.7.480.559
4mka2AYGenome polyprotein2.7.7.480.557
3igvB80Genome polyprotein2.7.7.480.547
3hkwIX6Genome polyprotein2.7.7.480.545
4mkb28VGenome polyprotein2.7.7.480.545
3bsc2PDGenome polyprotein2.7.7.480.536
3br9DEYGenome polyprotein2.7.7.480.523
1nb6UTPGenome polyprotein2.7.7.480.518
3uph0C1Genome polyprotein2.7.7.480.507
3d28B34Genome polyprotein2.7.7.480.503
2gc8885Polyprotein/0.495
2yoj8Y6Genome polyprotein2.7.7.480.493
3ska053Genome polyprotein2.7.7.480.470
2giqNN2Genome polyprotein2.7.7.480.466
4mk728OGenome polyprotein2.7.7.480.465
3g86T18Genome polyprotein2.7.7.480.452
4ih61EPGenome polyprotein2.7.7.480.447