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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3u4o08EGenome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3u4o08EGenome polyprotein2.7.7.481.000
3u4r08FGenome polyprotein2.7.7.480.570
3ska053Genome polyprotein2.7.7.480.538
4mkb28VGenome polyprotein2.7.7.480.534
4mk928RGenome polyprotein2.7.7.480.532
4mka2AYGenome polyprotein2.7.7.480.526
3hkwIX6Genome polyprotein2.7.7.480.516
3d28B34Genome polyprotein2.7.7.480.501
3igvB80Genome polyprotein2.7.7.480.500
3tyvHI3Genome polyprotein2.7.7.480.500
2gc8885Polyprotein/0.481
3br9DEYGenome polyprotein2.7.7.480.475
4mk728OGenome polyprotein2.7.7.480.452
3g86T18Genome polyprotein2.7.7.480.449
3csoXNIGenome polyprotein2.7.7.480.445