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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3u3o3QVSulfotransferase 1A12.8.2.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3u3o3QVSulfotransferase 1A12.8.2.11.000
2d06ESTSulfotransferase 1A12.8.2.10.580
1g3mPCQEstrogen sulfotransferase2.8.2.40.527
4jvmXDIEstrogen sulfotransferase2.8.2.40.512
4jvnYUGEstrogen sulfotransferase2.8.2.40.501
4jvlESTEstrogen sulfotransferase2.8.2.40.500
1aquESTEstrogen sulfotransferase, testis isoform2.8.2.40.465
4uy6SAHHistidine N-alpha-methyltransferase/0.459
1nquRDL6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.447
1uhoVDNcGMP-specific 3',5'-cyclic phosphodiesterase/0.447