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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3tyvHI3Genome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3tyvHI3Genome polyprotein2.7.7.481.000
4mkb28VGenome polyprotein2.7.7.480.549
2giqNN2Genome polyprotein2.7.7.480.548
3bsc2PDGenome polyprotein2.7.7.480.544
4ih61EPGenome polyprotein2.7.7.480.539
3u4r08FGenome polyprotein2.7.7.480.517
2gc8885Polyprotein/0.498
2yoj8Y6Genome polyprotein2.7.7.480.497
3u4o08EGenome polyprotein2.7.7.480.449
4mk928RGenome polyprotein2.7.7.480.443
4mk728OGenome polyprotein2.7.7.480.440