Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3tjlFMNNADPH dehydrogenase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3tjlFMNNADPH dehydrogenase/1.000
4m5pFMNNADPH dehydrogenase/0.602
4df2FMNNADPH dehydrogenase/0.530
4rnvFMNNADPH dehydrogenase 11.6.99.10.494
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.489
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.488
3f03FMNPentaerythritol tetranitrate reductase/0.487
1icqFMN12-oxophytodienoate reductase 11.3.1.420.481
1h50FMNPentaerythritol tetranitrate reductase/0.478
1icsFMN12-oxophytodienoate reductase 11.3.1.420.477
4qaiFMNNADPH dehydrogenase/0.474
1bwlFMNNADPH dehydrogenase 11.6.99.10.472
4tmbFMNOld yellow enzyme/0.469
1vyrFMNPentaerythritol tetranitrate reductase/0.467
1bwkFMNNADPH dehydrogenase 11.6.99.10.464
4jicFMNGTN Reductase/0.464
1oycFMNNADPH dehydrogenase 11.6.99.10.460
2abbFMNPentaerythritol tetranitrate reductase/0.460
1h63FMNPentaerythritol tetranitrate reductase/0.454
4tmcFMNOld yellow enzyme/0.454
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.453
3p74FMNPentaerythritol tetranitrate reductase/0.441
4e2dFMNDehydrogenase/0.440