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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3t423T4Aldose reductase1.1.1.21

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
3t423T4Aldose reductase1.1.1.211.000
2dv0ZSTAldose reductase1.1.1.210.675
1t41ID5Aldose reductase1.1.1.210.673
1z3n3NAAldose reductase1.1.1.210.671
3lenZSTAldose reductase1.1.1.210.665
1t40ID5Aldose reductase1.1.1.210.663
2fz9ZSTAldose reductase1.1.1.210.658
2ikj393Aldose reductase1.1.1.210.655
4gca2X9Aldose reductase1.1.1.210.655
2pdh47DAldose reductase1.1.1.210.650
2duxZSTAldose reductase1.1.1.210.647
2pdfZSTAldose reductase1.1.1.210.645
2hv5ZSTAldose reductase1.1.1.210.644
1z8962PAldose reductase1.1.1.210.642
3m4h388Aldose reductase1.1.1.210.640
3mb9ZSTAldose reductase1.1.1.210.640
2hvoZSTAldose reductase1.1.1.210.638
2pdxZSTAldose reductase1.1.1.210.634
3ghsLDTAldose reductase1.1.1.210.634
3m64393Aldose reductase1.1.1.210.632
2pdu393Aldose reductase1.1.1.210.631
2pd5ZSTAldose reductase1.1.1.210.630
3lboLDTAldose reductase1.1.1.210.628
2pdbZSTAldose reductase1.1.1.210.625
2pdp393Aldose reductase1.1.1.210.625
4yu153NAldose reductase1.1.1.210.625
2pzn393Aldose reductase1.1.1.210.624
3g5eQ74Aldose reductase1.1.1.210.624
3lqlLDTAldose reductase1.1.1.210.623
3ghrLDTAldose reductase1.1.1.210.616
3ghtLDTAldose reductase1.1.1.210.614
2pdg47DAldose reductase1.1.1.210.612
2qxwLDTAldose reductase1.1.1.210.609
3ld5LDTAldose reductase1.1.1.210.609
2duzZSTAldose reductase1.1.1.210.608
3ghuLDTAldose reductase1.1.1.210.608
1frbZSTAldose reductase-related protein 2/0.607
3lz5LDTAldose reductase1.1.1.210.605
2fz8ZSTAldose reductase1.1.1.210.603
2i16LDTAldose reductase1.1.1.210.603
2i17LDTAldose reductase1.1.1.210.602
1us0LDTAldose reductase1.1.1.210.600
1pwlBFIAldose reductase1.1.1.210.599
2ikhLITAldose reductase1.1.1.210.599
3m0iZSTAldose reductase1.1.1.210.598
2pdiZSTAldose reductase1.1.1.210.596
2pdq47DAldose reductase1.1.1.210.591
2pdn47DAldose reductase1.1.1.210.585
2iki388Aldose reductase1.1.1.210.582
3mc5393Aldose reductase1.1.1.210.574
2pdc393Aldose reductase1.1.1.210.564
1ieiZESAldose reductase1.1.1.210.551
2pdlTOLAldose reductase1.1.1.210.551
1zuaTOLAldo-keto reductase family 1 member B101.1.10.543
2fzdTOLAldose reductase1.1.1.210.541
1ah3TOLAldose reductase1.1.1.210.540
2pdj393Aldose reductase1.1.1.210.527
2xupTZ5Acetylcholinesterase3.1.1.70.500
4pnmNU1Tankyrase-22.4.2.300.487
1ihiIU5Aldo-keto reductase family 1 member C2/0.484
3ghvGHCDihydrofolate reductase1.5.1.30.481
1el3I84Aldose reductase1.1.1.210.480
3p2vDOYAldose reductase1.1.1.210.480
4eilFOLBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.480
2cbqTH2Neocarzinostatin/0.479
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.479
2c1zKMPAnthocyanidin 3-O-glucosyltransferase 22.4.1.1150.477
3k4s0MOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.476
4b117I1Glycylpeptide N-tetradecanoyltransferase/0.476
3f3y4OABile salt sulfotransferase2.8.2.140.472
4e0u0MVCyclic dipeptide N-prenyltransferase/0.471
1lnmDTXBilin-binding protein/0.470
3g493G4Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.470
2fm5M99cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.469
1dgbNDPCatalase1.11.1.60.468
4at4T6EBDNF/NT-3 growth factors receptor2.7.10.10.468
4hyf1AKTankyrase-22.4.2.300.468
4jtqFLPAldo-keto reductase family 1 member C2/0.468
4li71XPTankyrase-12.4.2.300.468
1rsgFADPolyamine oxidase FMS1/0.467
1xf0ASDAldo-keto reductase family 1 member C3/0.467
2bjsACVIsopenicillin N synthase1.21.3.10.467
2hzqSTRApolipoprotein D/0.467
4b13X25Glycylpeptide N-tetradecanoyltransferase/0.466
4dbw511Aldo-keto reductase family 1 member C3/0.466
4k4eK4ETankyrase-12.4.2.300.466
1uhoVDNcGMP-specific 3',5'-cyclic phosphodiesterase/0.465
2a57CRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.465
4li81XQTankyrase-12.4.2.300.465
1ro6ROLcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.464
4ky404JBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.464
1tfz8694-hydroxyphenylpyruvate dioxygenase1.13.11.270.463
1zgcA2EAcetylcholinesterase3.1.1.70.463
2xuhTZ4Acetylcholinesterase3.1.1.70.463
3x025GPPhosphatidylinositol 5-phosphate 4-kinase type-2 beta2.7.1.1490.463
3x04GNPPhosphatidylinositol 5-phosphate 4-kinase type-2 beta2.7.1.1490.463
1kyxCRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.462
3v36NAPAldose reductase1.1.1.210.462
3zv7NHGAcetylcholinesterase3.1.1.70.462
1eveE20Acetylcholinesterase3.1.1.70.461
1zgbA1EAcetylcholinesterase3.1.1.70.461
1zq5E04Aldo-keto reductase family 1 member C3/0.461
2xuiTZ5Acetylcholinesterase3.1.1.70.461
2aclL05Oxysterols receptor LXR-alpha/0.460
2agtFIDAldose reductase1.1.1.210.460
2gvcFADThiol-specific monooxygenase1.14.130.460
4bj9UHBTankyrase-22.4.2.300.460
1nqvLMZ6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.459
3aiqHBO4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase 1b, chloroplastic3.2.1.1820.459
3r58NPSAldo-keto reductase family 1 member C3/0.459
3vf60H6Glucokinase2.7.1.20.459
4psbGA3Cytokinin-specific binding protein/0.459
1p91SAM23S rRNA (guanine(745)-N(1))-methyltransferase/0.458
2cekN8TAcetylcholinesterase3.1.1.70.458
4gvsF4MMethenyltetrahydromethanopterin cyclohydrolase3.5.4.270.458
4li61XOTankyrase-12.4.2.300.458
4mm729JNa(+):neurotransmitter symporter (Snf family)/0.458
1paxDHQPoly [ADP-ribose] polymerase 12.4.2.300.457
2xugTZ4Acetylcholinesterase3.1.1.70.457
2xujTZ5Acetylcholinesterase3.1.1.70.457
3aivHBO4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase, chloroplastic3.2.1.1820.457
3n3zIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.457
3tvxPNXcAMP-specific 3',5'-cyclic phosphodiesterase 4A3.1.4.530.457
4dz5NAPAldo-keto reductase family 1 member C3/0.457
1ry0PG2Aldo-keto reductase family 1 member C3/0.456
1ut6A8NAcetylcholinesterase3.1.1.70.456
2e8uIPEGeranylgeranyl pyrophosphate synthase/0.456
2zb8IMNProstaglandin reductase 21.3.1.480.456
3hxeBD8Geranylgeranyl transferase type-2 subunit beta2.5.1.600.456
4jpg1OXPyruvate kinase PKM2.7.1.400.456
4mt92D6Tankyrase-12.4.2.300.456
1pj6FOLDimethylglycine oxidase1.5.3.100.455
1v08NTZ4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase 1, chloroplastic3.2.1.1820.455
1votHUPAcetylcholinesterase3.1.1.70.455
1y2k7DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.455
2fzbTOLAldose reductase1.1.1.210.455
2j9fTHV2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial1.2.4.40.455
2j9fTHV2-oxoisovalerate dehydrogenase subunit beta, mitochondrial1.2.4.40.455
3t31DCQSulfide-quinone reductase/0.455
1i5rHYCEstradiol 17-beta-dehydrogenase 11.1.1.620.454
2ouu35GcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.454
3g1rNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.454
3zkyWT4Isopenicillin N synthase1.21.3.10.454
4dbuBT9Aldo-keto reductase family 1 member C3/0.454
1dghNDPCatalase1.11.1.60.453
1e2lTMCThymidine kinase/0.453
1u08PLPMethionine aminotransferase/0.453
2f3815MAldo-keto reductase family 1 member C3/0.453
2vt4P32Beta-1 adrenergic receptor/0.453
3jq8DX3Pteridine reductase, putative/0.453
3o57ZG2cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.453
3rj0BLDProtein BRASSINOSTEROID INSENSITIVE 12.7.10.10.453
4kn104JFolate receptor beta/0.453
4msk2C8Tankyrase-12.4.2.300.453
4u163C0Muscarinic acetylcholine receptor M3/0.453
2f2kTGGAldose reductase1.1.1.210.452
2xufTZ4Acetylcholinesterase3.1.1.70.452
4eywL0RCarnitine O-palmitoyltransferase 2, mitochondrial2.3.1.210.452
4kn2LYAFolate receptor beta/0.452
5stdUNNScytalone dehydratase4.2.1.940.452
1kyvRBF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.451
1ry8RUTAldo-keto reductase family 1 member C3/0.451
1u65CP0Acetylcholinesterase3.1.1.70.451
1ye6NAPNAD(P)H-dependent D-xylose reductase1.1.1.3070.451
2v2zCDM4-diphosphocytidyl-2-C-methyl-D-erythritol kinase/0.451
2w6cBM4Acetylcholinesterase3.1.1.70.451
3qppPFWcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.451
4kmzFOLFolate receptor beta/0.451
1m9hNAD2,5-diketo-D-gluconic acid reductase A1.1.1.3460.450
2iqdLPAAldose reductase1.1.1.210.450
3d3p20AcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.450
3h7rNAPAldo-keto reductase family 4 member C8/0.450
4ajfF03cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.450
4bvnP32Beta-1 adrenergic receptor/0.450
4hmn16JAldo-keto reductase family 1 member C3/0.450
4ia05BBcGMP-specific 3',5'-cyclic phosphodiesterase/0.450
4lsaBLDProtein BRASSINOSTEROID INSENSITIVE 12.7.10.10.450
5fd8A5APutative carboxypeptidase yocD/0.450
1oynROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.449
3bv7NAP3-oxo-5-beta-steroid 4-dehydrogenase/0.449
3fvuIACKynurenine--oxoglutarate transaminase 12.6.1.70.449
4hlm16STankyrase-22.4.2.300.449
4j7hTRHPCZA361.3/0.449
1h35R01Squalene--hopene cyclase4.2.1.1290.448
1s2cFLFAldo-keto reductase family 1 member C3/0.448
1xoqROFcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.448
2a59LMZ6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.448
2wu4HBPAcetylcholinesterase3.1.1.70.448
2xuqTZ4Acetylcholinesterase3.1.1.70.448
3h7uNAPNADPH-dependent aldo-keto reductase, chloroplastic/0.448
4n65FMNFMN-dependent NADH-azoreductase 1/0.448
3uzwNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.447
4bjcRPBTankyrase-22.4.2.300.447
4ga8SBIAldo-keto reductase family 1 member B101.1.10.447
1ekoI84Aldose reductase1.1.1.210.446
1q9mROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.446
2gyuHI6Acetylcholinesterase3.1.1.70.446
2oazI96Methionine aminopeptidase 2/0.446
2xi4AFTAcetylcholinesterase3.1.1.70.446
4arbC57Acetylcholinesterase3.1.1.70.446
1isgAGSADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 23.2.2.60.445
1w6jR71Lanosterol synthase5.4.99.70.445
1y2c3DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.445
3mjrAC2Deoxycytidine kinase2.7.1.740.445
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.445
4d2dALA_ALA_ALADi-or tripeptide:H+ symporter/0.445
4tjy3GNTankyrase-22.4.2.300.445
1opmIYGPeptidyl-glycine alpha-amidating monooxygenase1.14.17.30.444
1pj7FFODimethylglycine oxidase1.5.3.100.444
1y2e5DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.444
2i65NADADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 13.2.2.60.444
2pdmZSTAldose reductase1.1.1.210.444
3exfTPPPyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial1.2.4.10.444
3exfTPPPyruvate dehydrogenase E1 component subunit beta, mitochondrial1.2.4.10.444
3iakEV1cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.444
3ntqNADInositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase1.1.1.180.444
3wavDWVEctonucleotide pyrophosphatase/phosphodiesterase family member 23.1.4.390.444
4araC56Acetylcholinesterase3.1.1.70.444
4ey6GNTAcetylcholinesterase3.1.1.70.444
4flkY10Methionine aminopeptidase 1/0.444
4phlPILPhosphodiesterase/0.444
5c1gGDUHisto-blood group ABO system transferase/0.444
1hqtNAPAlcohol dehydrogenase [NADP(+)]1.1.1.20.443
1zknIBMcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.443
2g5w8PG12-oxophytodienoate reductase 31.3.1.420.443
2hdjNDPAldo-keto reductase family 1 member C2/0.443
3dr7GPDGDP-perosamine synthase/0.443
3hmvHBTcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.443
3sfh1DIHistone deacetylase 83.5.1.980.443
3u3o3QVSulfotransferase 1A12.8.2.10.443
5liu388Aldo-keto reductase family 1 member B101.1.10.443
4u140HKMuscarinic acetylcholine receptor M3/0.443
1gpnHUBAcetylcholinesterase3.1.1.70.442
1o5rFR9Adenosine deaminase3.5.4.40.442
1odcA8BAcetylcholinesterase3.1.1.70.442
1tbbROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.442
1uk0FRMPoly [ADP-ribose] polymerase 12.4.2.300.442
2gywOBIAcetylcholinesterase3.1.1.70.442
2ouyCMPcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.442
3g58988cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.442
3ghwGHWDihydrofolate reductase1.5.1.30.442
3kegMREFMN-dependent NADH-azoreductase 1/0.442
3p9tTCLRepressor/0.442
3r7mSUZAldo-keto reductase family 1 member C3/0.442
4a0sCO8Octenoyl-CoA reductase/carboxylase/0.442
4jq1NPSAldo-keto reductase family 1 member C2/0.442
4jt81NRNAD-dependent protein deacetylase sirtuin-3, mitochondrial3.5.10.442
1rkwPNTHTH-type transcriptional regulator QacR/0.441
1xomCIOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.441
2b01TUDPhospholipase A2, major isoenzyme3.1.1.40.441
3dyqIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.441
4g2yNI5cGMP-specific 3',5'-cyclic phosphodiesterase/0.441
4hf415HcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.441
4jtqNAPAldo-keto reductase family 1 member C2/0.441
2ycxP32Beta-1 adrenergic receptor/0.441
1efyBZCPoly [ADP-ribose] polymerase 12.4.2.300.440
1esmCOAPantothenate kinase2.7.1.330.440
2bfaCB3Pteridine reductase 11.5.1.330.440
2yneYNEGlycylpeptide N-tetradecanoyltransferase/0.440
3gyf51PDihydrofolate reductase1.5.1.30.440
3hxbBD5Geranylgeranyl transferase type-2 subunit beta2.5.1.600.440
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.440
3nx2FERFerulic acid decarboxylase/0.440
3x03ANPPhosphatidylinositol 5-phosphate 4-kinase type-2 beta2.7.1.1490.440
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.440
4bvhOCZNAD-dependent protein deacetylase sirtuin-3, mitochondrial3.5.10.440
4f79P53Putative phospho-beta-glucosidase/0.440
4gtv7TRGeranylgeranyl transferase type-2 subunit beta2.5.1.600.440
4jq3ZOMAldo-keto reductase family 1 member C2/0.440
4x3uSVRChromobox protein homolog 7/0.440