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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3t3r9PLCytochrome P450 2A61.14.13

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3t3r9PLCytochrome P450 2A61.14.131.000
3t3q9PLCytochrome P450 2A61.14.130.599
4ejh0QACytochrome P450 2A131.14.14.10.590
4ejgNCTCytochrome P450 2A131.14.14.10.557
4eji0QACytochrome P450 2A131.14.14.10.512
3ibdCPZCytochrome P450 2B61.14.130.502
3tk3CPZCytochrome P450 2B41.14.14.10.490
1suoCPZCytochrome P450 2B41.14.14.10.489
3s79ASDAromatase1.14.14.140.477
4nky3QZSteroid 17-alpha-hydroxylase/17,20 lyase/0.466
4nkvAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.461
4c9oCAMCytochrome P450/0.452
4cp4CAMCamphor 5-monooxygenase1.14.15.10.449
3rukAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.446
1phePIYCamphor 5-monooxygenase1.14.15.10.445
4j6dTESCytochrome P450 monooxygenase/0.445
3cppCAMCamphor 5-monooxygenase1.14.15.10.444
1t85CAMCamphor 5-monooxygenase1.14.15.10.443
2qbmCAMCamphor 5-monooxygenase1.14.15.10.443
4l4dCAMCamphor 5-monooxygenase1.14.15.10.443
1iwjCAMCamphor 5-monooxygenase1.14.15.10.441
4l4eCAMCamphor 5-monooxygenase1.14.15.10.441
3wrmCAMCamphor 5-monooxygenase1.14.15.10.440
4enhFVXCholesterol 24-hydroxylase/0.440
4g3rCAMCamphor 5-monooxygenase1.14.15.10.440