sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3sw1 | FMN | Sensory box protein |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 3sw1 | FMN | Sensory box protein | / | 1.000 | |
| 5j3w | FMN | Sensory box protein | / | 0.559 | |
| 5j4e | FMN | Sensory box protein | / | 0.556 | |
| 1n9n | FMN | Putative blue light receptor | / | 0.503 | |
| 2z6d | FMN | Phototropin-2 | 2.7.11.1 | 0.497 | |
| 4eet | FMN | Phototropin-2 | 2.7.11.1 | 0.495 | |
| 3t50 | FMN | Blue-light-activated histidine kinase | 2.7.13.3 | 0.490 | |
| 2pdt | FAD | Vivid PAS protein VVD | / | 0.483 | |
| 3is2 | FAD | Vivid PAS protein VVD | / | 0.482 | |
| 4hia | FMN | LOV protein | / | 0.473 | |
| 2pr5 | FMN | Blue-light photoreceptor | / | 0.460 | |
| 3tqh | NDP | Quinone oxidoreductase | / | 0.460 | |
| 4wuj | FMN | Glycoside hydrolase family 15, cellulose signaling associated protein envoy | / | 0.454 | |
| 1qvr | ANP | Chaperone protein ClpB | / | 0.453 | |
| 5dkk | FMN | Predicted protein | / | 0.453 | |
| 4ien | COA | Putative acyl-CoA hydrolase | / | 0.452 | |
| 4r38 | RBF | Blue-light-activated histidine kinase 2 | 2.7.13.3 | 0.447 | |
| 4hj6 | FMN | LOV protein | / | 0.445 | |
| 1jpa | ANP | Ephrin type-B receptor 2 | 2.7.10.1 | 0.443 | |
| 1lol | XMP | Orotidine 5'-phosphate decarboxylase | 4.1.1.23 | 0.443 | |
| 1s60 | COA | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.441 | |
| 3umv | FAD | Deoxyribodipyrimidine photo-lyase | 4.1.99.3 | 0.440 |