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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ska053Genome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3ska053Genome polyprotein2.7.7.481.000
3u4o08EGenome polyprotein2.7.7.480.554
4mk928RGenome polyprotein2.7.7.480.545
3d28B34Genome polyprotein2.7.7.480.540
3ske054Genome polyprotein2.7.7.480.537
3hkwIX6Genome polyprotein2.7.7.480.518
3u4r08FGenome polyprotein2.7.7.480.505
4mkb28VGenome polyprotein2.7.7.480.502
3upi0C2Genome polyprotein2.7.7.480.493
4mka2AYGenome polyprotein2.7.7.480.492
3igvB80Genome polyprotein2.7.7.480.482
3br9DEYGenome polyprotein2.7.7.480.475
3gnvXNZGenome polyprotein2.7.7.480.474
3d5m4MSGenome polyprotein2.7.7.480.473
4mk728OGenome polyprotein2.7.7.480.468
3bsc2PDGenome polyprotein2.7.7.480.466
3tyvHI3Genome polyprotein2.7.7.480.462
2gc8885Polyprotein/0.460
3h59H59Genome polyprotein2.7.7.480.459
3uph0C1Genome polyprotein2.7.7.480.444