Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3sfy3FYUncharacterized protein

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3sfy3FYUncharacterized protein/1.000
3q7fED2Uncharacterized protein/0.789
1sa5BMVProtein farnesyltransferase subunit beta2.5.1.580.622
2r2lPB9Protein farnesyltransferase subunit beta2.5.1.580.595
3e33ED7Protein farnesyltransferase subunit beta2.5.1.580.592
1jcq739Protein farnesyltransferase subunit beta2.5.1.580.590
1ld7U66Protein farnesyltransferase subunit beta2.5.1.580.581
1s63778Protein farnesyltransferase subunit beta2.5.1.580.581
2h6iCYS_VAL_LEU_SER_GERProtein farnesyltransferase subunit beta2.5.1.580.574
1ni1HFPProtein farnesyltransferase subunit beta2.5.1.580.572
1o1s1NHProtein farnesyltransferase subunit beta2.5.1.580.571
3e30ED4Protein farnesyltransferase subunit beta2.5.1.580.565
1n95HFPProtein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha/0.563
1n95HFPProtein farnesyltransferase subunit beta2.5.1.580.563
1nl4HFPProtein farnesyltransferase subunit beta2.5.1.580.560
1ld8U49Protein farnesyltransferase subunit beta2.5.1.580.559
1n95FTHProtein farnesyltransferase subunit beta2.5.1.580.556
1sa4JANProtein farnesyltransferase subunit beta2.5.1.580.555
3ksqZ96Protein farnesyltransferase subunit beta2.5.1.580.543
1mzcBNEProtein farnesyltransferase subunit beta2.5.1.580.541
3e34ED1Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha/0.529
3e34ED1Protein farnesyltransferase subunit beta2.5.1.580.529
4gtr7TRProtein farnesyltransferase subunit beta2.5.1.580.523
2f0y3MNProtein farnesyltransferase subunit beta2.5.1.580.508
3kslSZHProtein farnesyltransferase subunit beta2.5.1.580.503
2iejS48Protein farnesyltransferase subunit beta2.5.1.580.501
3pz43PZProtein farnesyltransferase subunit beta2.5.1.580.495
3pz23PZGeranylgeranyl transferase type-2 subunit beta2.5.1.600.483
3sfxJANUncharacterized protein/0.474
1n4sCYS_VAL_ILE_LEU_GERGeranylgeranyl transferase type-1 subunit beta2.5.1.590.469
1o1t2NHProtein farnesyltransferase subunit beta2.5.1.580.462
1s64778Geranylgeranyl transferase type-1 subunit beta2.5.1.590.454
4gtv7TRGeranylgeranyl transferase type-2 subunit beta2.5.1.600.448