Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rywK9HFarnesyl pyrophosphate synthase, putative

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3rywK9HFarnesyl pyrophosphate synthase, putative/1.000
3ldwZOLFarnesyl pyrophosphate synthase, putative/0.533
3ez3ZOLFarnesyl pyrophosphate synthase, putative/0.502
3ez3IPEFarnesyl pyrophosphate synthase, putative/0.501
3ldwIPEFarnesyl pyrophosphate synthase, putative/0.500
3rbmB73Farnesyl pyrophosphate synthase, putative/0.484
4nkeRISFarnesyl pyrophosphate synthase2.5.1.100.483
4q23RISFarnesyl pyrophosphate synthase2.5.1.100.481
2opmNI9Farnesyl pyrophosphate synthase2.5.1.100.477
4lfvYS4Farnesyl pyrophosphate synthase2.5.1.100.474
2f94BFQFarnesyl pyrophosphate synthase2.5.1.100.469
4nkeIPEFarnesyl pyrophosphate synthase2.5.1.100.452