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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ryeUNRFarnesyl pyrophosphate synthase2.5.1.10

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3ryeUNRFarnesyl pyrophosphate synthase2.5.1.101.000
2opmNI9Farnesyl pyrophosphate synthase2.5.1.100.566
2f94BFQFarnesyl pyrophosphate synthase2.5.1.100.534
4nkeRISFarnesyl pyrophosphate synthase2.5.1.100.529
4q23RISFarnesyl pyrophosphate synthase2.5.1.100.528
3rbmB73Farnesyl pyrophosphate synthase, putative/0.520
1yq7RISFarnesyl pyrophosphate synthase2.5.1.100.519
4lfvYS4Farnesyl pyrophosphate synthase2.5.1.100.514
4nkeIPEFarnesyl pyrophosphate synthase2.5.1.100.512
3ldwZOLFarnesyl pyrophosphate synthase, putative/0.506
3ldwIPEFarnesyl pyrophosphate synthase, putative/0.500
3ez3IPEFarnesyl pyrophosphate synthase, putative/0.485
3rywK9HFarnesyl pyrophosphate synthase, putative/0.476