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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rr3FLRProstaglandin G/H synthase 21.14.99.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3rr3FLRProstaglandin G/H synthase 21.14.99.11.000
4coxIMNProstaglandin G/H synthase 21.14.99.10.651
4fm5DF0Prostaglandin G/H synthase 21.14.99.10.616
3mqe416Prostaglandin G/H synthase 21.14.99.10.579
5ikrID8Prostaglandin G/H synthase 21.14.99.10.579
3q7dNPXProstaglandin G/H synthase 21.14.99.10.574
3ntgD72Prostaglandin G/H synthase 21.14.99.10.563
4otyLURProstaglandin G/H synthase 21.14.99.10.546
3ln1CELProstaglandin G/H synthase 21.14.99.10.538
4rrwLURProstaglandin G/H synthase 21.14.99.10.513
4rrzLURProstaglandin G/H synthase 21.14.99.10.513
4ph9IBPProstaglandin G/H synthase 21.14.99.10.510
2oyuIMSProstaglandin G/H synthase 11.14.99.10.483
3pghFLPProstaglandin G/H synthase 21.14.99.10.468
2oyeIM8Prostaglandin G/H synthase 11.14.99.10.466
4rrxLURProstaglandin G/H synthase 21.14.99.10.459
3n8wFLPProstaglandin G/H synthase 11.14.99.10.457
4m10ICDProstaglandin G/H synthase 21.14.99.10.451