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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qxoX65Cyclin-dependent kinase 22.7.11.22

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3qxoX65Cyclin-dependent kinase 22.7.11.221.000
3rm719ZCyclin-dependent kinase 22.7.11.220.722
3r6xX84Cyclin-dependent kinase 22.7.11.220.710
3raiX85Cyclin-dependent kinase 22.7.11.220.673
3roy22ZCyclin-dependent kinase 22.7.11.220.634
3s2pPMUCyclin-dependent kinase 22.7.11.220.610
2btrU73Cyclin-dependent kinase 22.7.11.220.603
4fki09KCyclin-dependent kinase 22.7.11.220.593
3lfnA27Cyclin-dependent kinase 22.7.11.220.591
3iggEFQCyclin-dependent kinase 22.7.11.220.588
4ek610KCyclin-dependent kinase 22.7.11.220.586
3r8lZ30Cyclin-dependent kinase 22.7.11.220.585
3qx2X63Cyclin-dependent kinase 22.7.11.220.584
2vtpLZ9Cyclin-dependent kinase 22.7.11.220.582
2r64740Cyclin-dependent kinase 22.7.11.220.578
3sqq99ZCyclin-dependent kinase 22.7.11.220.578
1ckpPVBCyclin-dependent kinase 22.7.11.220.574
3qqfX07Cyclin-dependent kinase 22.7.11.220.571
3qzgX67Cyclin-dependent kinase 22.7.11.220.570
3r73X87Cyclin-dependent kinase 22.7.11.220.569
2a0cCK9Cyclin-dependent kinase 22.7.11.220.568
2c6o4SPCyclin-dependent kinase 22.7.11.220.568
3r7yZ04Cyclin-dependent kinase 22.7.11.220.568
2r3p3SCCyclin-dependent kinase 22.7.11.220.567
1pxmCK5Cyclin-dependent kinase 22.7.11.220.565
2btsU32Cyclin-dependent kinase 22.7.11.220.565
3qtzX42Cyclin-dependent kinase 22.7.11.220.565
3qqkX02Cyclin-dependent kinase 22.7.11.220.564
4fkpLS5Cyclin-dependent kinase 22.7.11.220.563
3r1yX76Cyclin-dependent kinase 22.7.11.220.562
3qu0X40Cyclin-dependent kinase 22.7.11.220.561
3qwjX6ACyclin-dependent kinase 22.7.11.220.561
3r7vZ02Cyclin-dependent kinase 22.7.11.220.560
3lfqA28Cyclin-dependent kinase 22.7.11.220.557
3r1sX73Cyclin-dependent kinase 22.7.11.220.557
3qwkX62Cyclin-dependent kinase 22.7.11.220.556
2uzoC62Cyclin-dependent kinase 22.7.11.220.555
3r1qX75Cyclin-dependent kinase 22.7.11.220.555
4fkt48KCyclin-dependent kinase 22.7.11.220.555
3lfsA07Cyclin-dependent kinase 22.7.11.220.554
1v1k3FPCyclin-dependent kinase 22.7.11.220.552
2exmZIPCyclin-dependent kinase 22.7.11.220.549
3rpv26ZCyclin-dependent kinase 22.7.11.220.549
3s0o50ZCyclin-dependent kinase 22.7.11.220.549
2r3lSCWCyclin-dependent kinase 22.7.11.220.548
1ke6LS2Cyclin-dependent kinase 22.7.11.220.547
3r7uX96Cyclin-dependent kinase 22.7.11.220.546
3rni21ZCyclin-dependent kinase 22.7.11.220.546
4fkr45KCyclin-dependent kinase 22.7.11.220.544
2vtiLZ3Cyclin-dependent kinase 22.7.11.220.543
3rjc06ZCyclin-dependent kinase 22.7.11.220.542
4fkq42KCyclin-dependent kinase 22.7.11.220.542
1oiqHDUCyclin-dependent kinase 22.7.11.220.541
3rm618ZCyclin-dependent kinase 22.7.11.220.541
3ral04ZCyclin-dependent kinase 22.7.11.220.540
4fkj11KCyclin-dependent kinase 22.7.11.220.540
1ke5LS1Cyclin-dependent kinase 22.7.11.220.537
2fvdLIACyclin-dependent kinase 22.7.11.220.537
3r28XA0Cyclin-dependent kinase 22.7.11.220.537
4lyn1YGCyclin-dependent kinase 22.7.11.220.537
2c6iDT1Cyclin-dependent kinase 22.7.11.220.536
3r83Z14Cyclin-dependent kinase 22.7.11.220.536
2w06FRVCyclin-dependent kinase 22.7.11.220.535
3ezvEZVCyclin-dependent kinase 22.7.11.220.535
3rk909ZCyclin-dependent kinase 22.7.11.220.535
1gih1PUCyclin-dependent kinase 22.7.11.220.534
2vthLZ2Cyclin-dependent kinase 22.7.11.220.534
2vtjLZ4Cyclin-dependent kinase 22.7.11.220.534
1p2a5BNCyclin-dependent kinase 22.7.11.220.533
3qtuX44Cyclin-dependent kinase 22.7.11.220.533
2a4lRRCCyclin-dependent kinase 22.7.11.220.532
3qruX19Cyclin-dependent kinase 22.7.11.220.532
3qzhX69Cyclin-dependent kinase 22.7.11.220.531
1ke9LS5Cyclin-dependent kinase 22.7.11.220.530
1vyzN5BCyclin-dependent kinase 22.7.11.220.530
2xmyCDKCyclin-dependent kinase 22.7.11.220.530
1ykr628Cyclin-dependent kinase 22.7.11.220.529
3rpo24ZCyclin-dependent kinase 22.7.11.220.529
1w8cN69Cyclin-dependent kinase 22.7.11.220.528
4ek816KCyclin-dependent kinase 22.7.11.220.528
1h0w207Cyclin-dependent kinase 22.7.11.220.527
3s1h56ZCyclin-dependent kinase 22.7.11.220.527
4bgh3I6Cyclin-dependent kinase 22.7.11.220.527
1oitHDTCyclin-dependent kinase 22.7.11.220.526
1pxoCK7Cyclin-dependent kinase 22.7.11.220.526
3qtxX43Cyclin-dependent kinase 22.7.11.220.526
3ti1B49Cyclin-dependent kinase 22.7.11.220.526
2r3kSCQCyclin-dependent kinase 22.7.11.220.525
1fvt106Cyclin-dependent kinase 22.7.11.220.523
4fkg4CKCyclin-dependent kinase 22.7.11.220.523
3ezrEZRCyclin-dependent kinase 22.7.11.220.522
3r71X86Cyclin-dependent kinase 22.7.11.220.522
4ez30S0Cyclin-dependent kinase 22.7.11.220.522
3rak03ZCyclin-dependent kinase 22.7.11.220.521
1g5sI17Cyclin-dependent kinase 22.7.11.220.519
1urwI1PCyclin-dependent kinase 22.7.11.220.519
1w0xOLOCyclin-dependent kinase 22.7.11.220.519
3r7iX9ICyclin-dependent kinase 22.7.11.220.519
4acm7YGCyclin-dependent kinase 22.7.11.220.518
4fkv61KCyclin-dependent kinase 22.7.11.220.518
1ke7LS3Cyclin-dependent kinase 22.7.11.220.517
2uznC96Cyclin-dependent kinase 22.7.11.220.516
3r8pZ46Cyclin-dependent kinase 22.7.11.220.514
1b38ATPCyclin-dependent kinase 22.7.11.220.512
2r3mSCXCyclin-dependent kinase 22.7.11.220.512
3ddpRC8Cyclin-dependent kinase 22.7.11.220.512
1oguST8Cyclin-dependent kinase 22.7.11.220.511
2vu3LZECyclin-dependent kinase 22.7.11.220.511
1pxpCK8Cyclin-dependent kinase 22.7.11.220.509
3unk0BYCyclin-dependent kinase 22.7.11.220.508
3ig7EFPCyclin-dependent kinase 22.7.11.220.507
3rpy27ZCyclin-dependent kinase 22.7.11.220.507
1h1s4SPCyclin-dependent kinase 22.7.11.220.506
2r3iSCFCyclin-dependent kinase 22.7.11.220.506
3fz1B98Cyclin-dependent kinase 22.7.11.220.506
3rk708ZCyclin-dependent kinase 22.7.11.220.506
3r7eX88Cyclin-dependent kinase 22.7.11.220.505
4kd11QKCyclin-dependent kinase 22.7.11.220.504
2r3r6SCCyclin-dependent kinase 22.7.11.220.503
3qrtX14Cyclin-dependent kinase 22.7.11.220.503
5aniES4Cyclin-dependent kinase 22.7.11.220.503
1b39ATPCyclin-dependent kinase 22.7.11.220.502
1oirHDYCyclin-dependent kinase 22.7.11.220.502
1gii1PUCyclin-dependent kinase 22.7.11.220.501
2c5yMTWCyclin-dependent kinase 22.7.11.220.501
3qqhX0ACyclin-dependent kinase 22.7.11.220.501
3r9hZ67Cyclin-dependent kinase 22.7.11.220.501
3sw418KCyclin-dependent kinase 22.7.11.220.501
1ke8LS4Cyclin-dependent kinase 22.7.11.220.500
1vyw292Cyclin-dependent kinase 22.7.11.220.500
3r8vZ62Cyclin-dependent kinase 22.7.11.220.500
3rk507ZCyclin-dependent kinase 22.7.11.220.500
3wblPDYCyclin-dependent kinase 22.7.11.220.500
1pxkCK3Cyclin-dependent kinase 22.7.11.220.499
2bhhRYUCyclin-dependent kinase 22.7.11.220.498
2j9mPY8Cyclin-dependent kinase 22.7.11.220.498
3qxpX64Cyclin-dependent kinase 22.7.11.220.498
2c69CT8Cyclin-dependent kinase 22.7.11.220.497
2duv371Cyclin-dependent kinase 22.7.11.220.497
2w1hL0FCyclin-dependent kinase 22.7.11.220.496
3rahO1ZCyclin-dependent kinase 22.7.11.220.496
3sw719KCyclin-dependent kinase 22.7.11.220.495
1oi9N20Cyclin-dependent kinase 22.7.11.220.494
1pxlCK4Cyclin-dependent kinase 22.7.11.220.493
2b55D31Cyclin-dependent kinase 22.7.11.220.493
4fks46KCyclin-dependent kinase 22.7.11.220.492
2iw84SPCyclin-dependent kinase 22.7.11.220.491
2r3fSC8Cyclin-dependent kinase 22.7.11.220.491
2vtsLZCCyclin-dependent kinase 22.7.11.220.491
2wpa889Cyclin-dependent kinase 22.7.11.220.491
3ddqRRCCyclin-dependent kinase 22.7.11.220.491
2c6lDT4Cyclin-dependent kinase 22.7.11.220.490
2r3o2SCCyclin-dependent kinase 22.7.11.220.490
4bcpT3CCyclin-dependent kinase 22.7.11.220.489
1dm2HMDCyclin-dependent kinase 22.7.11.220.488
3pj8404Cyclin-dependent kinase 22.7.11.220.488
3qzfX66Cyclin-dependent kinase 22.7.11.220.488
4fx360KCyclin-dependent kinase 22.7.11.220.488
2wxvWXVCyclin-dependent kinase 22.7.11.220.487
1oiyN41Cyclin-dependent kinase 22.7.11.220.486
2b52D42Cyclin-dependent kinase 22.7.11.220.486
2iw94SPCyclin-dependent kinase 22.7.11.220.486
3r9nZ68Cyclin-dependent kinase 22.7.11.220.486
3r9dX6BCyclin-dependent kinase 22.7.11.220.485
3rmf20ZCyclin-dependent kinase 22.7.11.220.485
4fklCK2Cyclin-dependent kinase 22.7.11.220.485
1h1r6CPCyclin-dependent kinase 22.7.11.220.484
1unlRRCCyclin-dependent-like kinase 52.7.11.10.484
2r3jSCJCyclin-dependent kinase 22.7.11.220.484
3unj0BXCyclin-dependent kinase 22.7.11.220.484
3qtqX35Cyclin-dependent kinase 22.7.11.220.483
4eor4SPCyclin-dependent kinase 22.7.11.220.482
1pyePM1Cyclin-dependent kinase 22.7.11.220.481
2iw6QQ2Cyclin-dependent kinase 22.7.11.220.481
4fko20KCyclin-dependent kinase 22.7.11.220.481
1finATPCyclin-dependent kinase 22.7.11.220.480
4nj32KDCyclin-dependent kinase 22.7.11.220.480
2c6mDT5Cyclin-dependent kinase 22.7.11.220.479
3pxyJWSCyclin-dependent kinase 22.7.11.220.479
3qtrX36Cyclin-dependent kinase 22.7.11.220.478
1h0vUN4Cyclin-dependent kinase 22.7.11.220.477
1y91CT9Cyclin-dependent kinase 22.7.11.220.477
2vttLZDCyclin-dependent kinase 22.7.11.220.477
2i40BLZCyclin-dependent kinase 22.7.11.220.476
2vv9IM9Cyclin-dependent kinase 22.7.11.220.475
4fkw62KCyclin-dependent kinase 22.7.11.220.474
1di8DTQCyclin-dependent kinase 22.7.11.220.471
2r3gSC9Cyclin-dependent kinase 22.7.11.220.471
2w17I19Cyclin-dependent kinase 22.7.11.220.471
1e1xNW1Cyclin-dependent kinase 22.7.11.220.470
4eon1ROCyclin-dependent kinase 22.7.11.220.470
1r78FMDCyclin-dependent kinase 22.7.11.220.468
1y8yCT7Cyclin-dependent kinase 22.7.11.220.468
1e9hINRCyclin-dependent kinase 22.7.11.220.467
3tiz3TICyclin-dependent kinase 22.7.11.220.467
4eol1ROCyclin-dependent kinase 22.7.11.220.467
3s00Z60Cyclin-dependent kinase 22.7.11.220.465
2c4g514Cyclin-dependent kinase 22.7.11.220.464
2vtnLZ7Cyclin-dependent kinase 22.7.11.220.464
4eop1ROCyclin-dependent kinase 22.7.11.220.464
3ql8X01Cyclin-dependent kinase 22.7.11.220.463
3dogNNNCyclin-dependent kinase 22.7.11.220.461
1aq1STUCyclin-dependent kinase 22.7.11.220.459
1hckATPCyclin-dependent kinase 22.7.11.220.459
1gz8MBPCyclin-dependent kinase 22.7.11.220.458
3rzb02ZCyclin-dependent kinase 22.7.11.220.458
1gij2PUCyclin-dependent kinase 22.7.11.220.457
1oiuN76Cyclin-dependent kinase 22.7.11.220.457
2bheBRYCyclin-dependent kinase 22.7.11.220.457
2r3q5SCCyclin-dependent kinase 22.7.11.220.455
3r9oZ71Cyclin-dependent kinase 22.7.11.220.455
4eok4SPCyclin-dependent kinase 22.7.11.220.455
3my5RFZCyclin-dependent kinase 22.7.11.220.454
3py0SU9Cyclin-dependent kinase 22.7.11.220.454
4eomATPCyclin-dependent kinase 22.7.11.220.454
3qziX72Cyclin-dependent kinase 22.7.11.220.453
4eos1ROCyclin-dependent kinase 22.7.11.220.453
2c5nCK8Cyclin-dependent kinase 22.7.11.220.451
1pkdUCNCyclin-dependent kinase 22.7.11.220.449
2zjwREFCasein kinase II subunit alpha2.7.11.10.449
2b54D05Cyclin-dependent kinase 22.7.11.220.448
2wihP48Cyclin-dependent kinase 22.7.11.220.448
4bcnT9NCyclin-dependent kinase 22.7.11.220.448
2uzdC85Cyclin-dependent kinase 22.7.11.220.447
3bhtMFRCyclin-dependent kinase 22.7.11.220.447
3rkb12ZCyclin-dependent kinase 22.7.11.220.445
4bcoT6QCyclin-dependent kinase 22.7.11.220.445
1h1pCMGCyclin-dependent kinase 22.7.11.220.444
2c6tDT5Cyclin-dependent kinase 22.7.11.220.444
3axwTIDCasein kinase II subunit alpha2.7.11.10.443
3r8uZ31Cyclin-dependent kinase 22.7.11.220.443
3r8zZ63Cyclin-dependent kinase 22.7.11.220.442
3tnwF18Cyclin-dependent kinase 22.7.11.220.442
2x1nX1NCyclin-dependent kinase 22.7.11.220.441
3qqlX03Cyclin-dependent kinase 22.7.11.220.441
3qx4X4BCyclin-dependent kinase 22.7.11.220.441
3uli1N3Cyclin-dependent kinase 22.7.11.220.441
4ii5ADPCyclin-dependent kinase 22.7.11.220.441
2uzlC94Cyclin-dependent kinase 22.7.11.220.440