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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qtuX44Cyclin-dependent kinase 22.7.11.22

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3qtuX44Cyclin-dependent kinase 22.7.11.221.000
3rpv26ZCyclin-dependent kinase 22.7.11.220.642
3qzgX67Cyclin-dependent kinase 22.7.11.220.574
3qu0X40Cyclin-dependent kinase 22.7.11.220.571
1pxmCK5Cyclin-dependent kinase 22.7.11.220.563
3r9dX6BCyclin-dependent kinase 22.7.11.220.558
3qtxX43Cyclin-dependent kinase 22.7.11.220.557
3rk909ZCyclin-dependent kinase 22.7.11.220.553
2btrU73Cyclin-dependent kinase 22.7.11.220.549
2btsU32Cyclin-dependent kinase 22.7.11.220.549
3rmf20ZCyclin-dependent kinase 22.7.11.220.546
4acm7YGCyclin-dependent kinase 22.7.11.220.541
2xmyCDKCyclin-dependent kinase 22.7.11.220.537
3r73X87Cyclin-dependent kinase 22.7.11.220.536
3rjc06ZCyclin-dependent kinase 22.7.11.220.535
3ezvEZVCyclin-dependent kinase 22.7.11.220.534
3rm618ZCyclin-dependent kinase 22.7.11.220.532
4bgh3I6Cyclin-dependent kinase 22.7.11.220.531
1ke5LS1Cyclin-dependent kinase 22.7.11.220.530
1vyzN5BCyclin-dependent kinase 22.7.11.220.528
4fkq42KCyclin-dependent kinase 22.7.11.220.528
3lfnA27Cyclin-dependent kinase 22.7.11.220.525
3qtzX42Cyclin-dependent kinase 22.7.11.220.525
2c6o4SPCyclin-dependent kinase 22.7.11.220.524
3rpo24ZCyclin-dependent kinase 22.7.11.220.524
3r8lZ30Cyclin-dependent kinase 22.7.11.220.523
3r7yZ04Cyclin-dependent kinase 22.7.11.220.520
2w06FRVCyclin-dependent kinase 22.7.11.220.519
3r71X86Cyclin-dependent kinase 22.7.11.220.516
4fkr45KCyclin-dependent kinase 22.7.11.220.511
3rni21ZCyclin-dependent kinase 22.7.11.220.510
3qxpX64Cyclin-dependent kinase 22.7.11.220.509
4fko20KCyclin-dependent kinase 22.7.11.220.509
4fkpLS5Cyclin-dependent kinase 22.7.11.220.509
1ke6LS2Cyclin-dependent kinase 22.7.11.220.508
1ykr628Cyclin-dependent kinase 22.7.11.220.508
3r1sX73Cyclin-dependent kinase 22.7.11.220.508
1urwI1PCyclin-dependent kinase 22.7.11.220.507
2c6iDT1Cyclin-dependent kinase 22.7.11.220.506
2fvdLIACyclin-dependent kinase 22.7.11.220.506
1p2a5BNCyclin-dependent kinase 22.7.11.220.505
2vu3LZECyclin-dependent kinase 22.7.11.220.505
4fkt48KCyclin-dependent kinase 22.7.11.220.505
2vtiLZ3Cyclin-dependent kinase 22.7.11.220.503
1y91CT9Cyclin-dependent kinase 22.7.11.220.502
3s1h56ZCyclin-dependent kinase 22.7.11.220.502
3unk0BYCyclin-dependent kinase 22.7.11.220.502
3py0SU9Cyclin-dependent kinase 22.7.11.220.500
3rk708ZCyclin-dependent kinase 22.7.11.220.500
1oiyN41Cyclin-dependent kinase 22.7.11.220.499
1pxoCK7Cyclin-dependent kinase 22.7.11.220.499
3r9hZ67Cyclin-dependent kinase 22.7.11.220.499
3rk507ZCyclin-dependent kinase 22.7.11.220.499
4ek610KCyclin-dependent kinase 22.7.11.220.499
4fkv61KCyclin-dependent kinase 22.7.11.220.498
1pxlCK4Cyclin-dependent kinase 22.7.11.220.494
1ckpPVBCyclin-dependent kinase 22.7.11.220.493
3iggEFQCyclin-dependent kinase 22.7.11.220.493
2vtoLZ8Cyclin-dependent kinase 22.7.11.220.491
3rkb12ZCyclin-dependent kinase 22.7.11.220.491
3unj0BXCyclin-dependent kinase 22.7.11.220.491
3qwjX6ACyclin-dependent kinase 22.7.11.220.490
1oitHDTCyclin-dependent kinase 22.7.11.220.489
2w1hL0FCyclin-dependent kinase 22.7.11.220.489
2a0cCK9Cyclin-dependent kinase 22.7.11.220.488
2vtjLZ4Cyclin-dependent kinase 22.7.11.220.488
3sqq99ZCyclin-dependent kinase 22.7.11.220.488
4ez30S0Cyclin-dependent kinase 22.7.11.220.488
4fkw62KCyclin-dependent kinase 22.7.11.220.488
3qxoX65Cyclin-dependent kinase 22.7.11.220.487
3qruX19Cyclin-dependent kinase 22.7.11.220.486
3qtrX36Cyclin-dependent kinase 22.7.11.220.484
4fks46KCyclin-dependent kinase 22.7.11.220.484
2vv9IM9Cyclin-dependent kinase 22.7.11.220.483
3r9oZ71Cyclin-dependent kinase 22.7.11.220.483
4ek816KCyclin-dependent kinase 22.7.11.220.483
1gih1PUCyclin-dependent kinase 22.7.11.220.482
1w0xOLOCyclin-dependent kinase 22.7.11.220.482
2uzoC62Cyclin-dependent kinase 22.7.11.220.482
4fki09KCyclin-dependent kinase 22.7.11.220.482
1fvv107Cyclin-dependent kinase 22.7.11.220.481
1ke7LS3Cyclin-dependent kinase 22.7.11.220.481
2bhhRYUCyclin-dependent kinase 22.7.11.220.481
2vthLZ2Cyclin-dependent kinase 22.7.11.220.481
2vttLZDCyclin-dependent kinase 22.7.11.220.481
3rak03ZCyclin-dependent kinase 22.7.11.220.481
1fvt106Cyclin-dependent kinase 22.7.11.220.480
2vtpLZ9Cyclin-dependent kinase 22.7.11.220.480
3rm719ZCyclin-dependent kinase 22.7.11.220.480
3sw719KCyclin-dependent kinase 22.7.11.220.480
3roy22ZCyclin-dependent kinase 22.7.11.220.479
3r8vZ62Cyclin-dependent kinase 22.7.11.220.478
2j9mPY8Cyclin-dependent kinase 22.7.11.220.477
3qqkX02Cyclin-dependent kinase 22.7.11.220.477
3sw418KCyclin-dependent kinase 22.7.11.220.477
1g5sI17Cyclin-dependent kinase 22.7.11.220.474
1oguST8Cyclin-dependent kinase 22.7.11.220.474
3qqlX03Cyclin-dependent kinase 22.7.11.220.474
3wblPDYCyclin-dependent kinase 22.7.11.220.474
2r3lSCWCyclin-dependent kinase 22.7.11.220.473
3ig7EFPCyclin-dependent kinase 22.7.11.220.473
3pj8404Cyclin-dependent kinase 22.7.11.220.473
3ddqRRCCyclin-dependent kinase 22.7.11.220.472
3ezrEZRCyclin-dependent kinase 22.7.11.220.472
3qqfX07Cyclin-dependent kinase 22.7.11.220.472
3qzhX69Cyclin-dependent kinase 22.7.11.220.472
3ral04ZCyclin-dependent kinase 22.7.11.220.472
3r8pZ46Cyclin-dependent kinase 22.7.11.220.471
3uli1N3Cyclin-dependent kinase 22.7.11.220.471
3r28XA0Cyclin-dependent kinase 22.7.11.220.470
3r7vZ02Cyclin-dependent kinase 22.7.11.220.470
4fkj11KCyclin-dependent kinase 22.7.11.220.470
1h0w207Cyclin-dependent kinase 22.7.11.220.468
1ke9LS5Cyclin-dependent kinase 22.7.11.220.468
1v1k3FPCyclin-dependent kinase 22.7.11.220.468
1w8cN69Cyclin-dependent kinase 22.7.11.220.468
2b52D42Cyclin-dependent kinase 22.7.11.220.468
3qx2X63Cyclin-dependent kinase 22.7.11.220.466
3r6xX84Cyclin-dependent kinase 22.7.11.220.466
1pyePM1Cyclin-dependent kinase 22.7.11.220.465
4fkg4CKCyclin-dependent kinase 22.7.11.220.464
4lyn1YGCyclin-dependent kinase 22.7.11.220.464
1pxkCK3Cyclin-dependent kinase 22.7.11.220.463
3r83Z14Cyclin-dependent kinase 22.7.11.220.462
1h1s4SPCyclin-dependent kinase 22.7.11.220.461
3rpy27ZCyclin-dependent kinase 22.7.11.220.461
3s2pPMUCyclin-dependent kinase 22.7.11.220.461
1di8DTQCyclin-dependent kinase 22.7.11.220.459
2r3iSCFCyclin-dependent kinase 22.7.11.220.459
2uznC96Cyclin-dependent kinase 22.7.11.220.459
3rahO1ZCyclin-dependent kinase 22.7.11.220.459
2iw94SPCyclin-dependent kinase 22.7.11.220.458
3r1yX76Cyclin-dependent kinase 22.7.11.220.458
3s0o50ZCyclin-dependent kinase 22.7.11.220.458
3fz1B98Cyclin-dependent kinase 22.7.11.220.457
4fx360KCyclin-dependent kinase 22.7.11.220.457
1h1r6CPCyclin-dependent kinase 22.7.11.220.456
2w17I19Cyclin-dependent kinase 22.7.11.220.456
2r64740Cyclin-dependent kinase 22.7.11.220.455
3raiX85Cyclin-dependent kinase 22.7.11.220.455
2r3r6SCCyclin-dependent kinase 22.7.11.220.454
3r1qX75Cyclin-dependent kinase 22.7.11.220.454
1e1xNW1Cyclin-dependent kinase 22.7.11.220.453
2c6kDT2Cyclin-dependent kinase 22.7.11.220.453
2duv371Cyclin-dependent kinase 22.7.11.220.452
3r7uX96Cyclin-dependent kinase 22.7.11.220.452
2iw84SPCyclin-dependent kinase 22.7.11.220.451
3qrtX14Cyclin-dependent kinase 22.7.11.220.450
3r7eX88Cyclin-dependent kinase 22.7.11.220.450
1ke8LS4Cyclin-dependent kinase 22.7.11.220.449
1pxpCK8Cyclin-dependent kinase 22.7.11.220.449
2r3kSCQCyclin-dependent kinase 22.7.11.220.449
3lfqA28Cyclin-dependent kinase 22.7.11.220.449
3ql8X01Cyclin-dependent kinase 22.7.11.220.449
1r78FMDCyclin-dependent kinase 22.7.11.220.448
3pxyJWSCyclin-dependent kinase 22.7.11.220.448
4eos1ROCyclin-dependent kinase 22.7.11.220.448
1q5kTMUGlycogen synthase kinase-3 beta2.7.11.260.445
3ddpRC8Cyclin-dependent kinase 22.7.11.220.444
2c6lDT4Cyclin-dependent kinase 22.7.11.220.443
4eor4SPCyclin-dependent kinase 22.7.11.220.443
2b55D31Cyclin-dependent kinase 22.7.11.220.442
1gii1PUCyclin-dependent kinase 22.7.11.220.441
1oirHDYCyclin-dependent kinase 22.7.11.220.441
4bcmT7ZCyclin-dependent kinase 22.7.11.220.441
4bcnT9NCyclin-dependent kinase 22.7.11.220.441
1oi9N20Cyclin-dependent kinase 22.7.11.220.440
3qqhX0ACyclin-dependent kinase 22.7.11.220.440