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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qen5BTDeoxycytidine kinase2.7.1.74

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3qen5BTDeoxycytidine kinase2.7.1.741.000
4jlj1NMDeoxycytidine kinase2.7.1.740.631
2zi63D1Deoxycytidine kinase2.7.1.740.575
4jln18VDeoxycytidine kinase2.7.1.740.553
4jlk1NODeoxycytidine kinase2.7.1.740.522
2zi53L1Deoxycytidine kinase2.7.1.740.503
4jlm1NNDeoxycytidine kinase2.7.1.740.487
4l5b1UXDeoxycytidine kinase2.7.1.740.474
3qeoLLTDeoxycytidine kinase2.7.1.740.471
3mjrAC2Deoxycytidine kinase2.7.1.740.452