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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3q9xEMOCasein kinase II subunit alpha2.7.11.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3q9xEMOCasein kinase II subunit alpha2.7.11.11.000
4grb0XGCasein kinase II subunit alpha2.7.11.10.618
3ofm4B0Casein kinase II subunit alpha'2.7.11.10.589
2pvlP55Casein kinase II subunit alpha2.7.11.10.581
3be9P04Casein kinase II subunit alpha2.7.11.10.570
4dgnLU2Casein kinase II subunit alpha2.7.11.10.570
5cvfATPCasein kinase II subunit alpha2.7.11.10.569
3at4CCKCasein kinase II subunit alpha2.7.11.10.564
4anmWULCasein kinase II subunit alpha2.7.11.10.559
2pvmP29Casein kinase II subunit alpha2.7.11.10.545
3axwTIDCasein kinase II subunit alpha2.7.11.10.543
1m2pHNACasein kinase II subunit alpha2.7.11.10.532
2pvhP19Casein kinase II subunit alpha2.7.11.10.532
4dgmAGICasein kinase II subunit alpha2.7.11.10.531
3u4uLNHCasein kinase II subunit alpha2.7.11.10.523
1om1IQACasein kinase II subunit alpha2.7.11.10.519
3pe2E1BCasein kinase II subunit alpha2.7.11.10.506
2pvjP44Casein kinase II subunit alpha2.7.11.10.505
3mb714ICasein kinase II subunit alpha2.7.11.10.505
2yaaATPDeath-associated protein kinase 2/0.489
1dayGNPCasein kinase II subunit alpha2.7.11.10.488
2zjwREFCasein kinase II subunit alpha2.7.11.10.483
1pjkANPCasein kinase II subunit alpha2.7.11.10.482
4mq12C3Dual specificity tyrosine-phosphorylation-regulated kinase 1A2.7.12.10.478
2pvnP63Casein kinase II subunit alpha2.7.11.10.476
5av2KMPDeath-associated protein kinase 12.7.11.10.476
1dawANPCasein kinase II subunit alpha2.7.11.10.465
2w05FRTCyclin-dependent kinase 22.7.11.220.456
3lltANPProtein serine/threonine kinase-1/0.453
3rkb12ZCyclin-dependent kinase 22.7.11.220.453
4fg7ATPCalcium/calmodulin-dependent protein kinase type 12.7.11.170.452
4lfiGNPCasein kinase II subunit alpha2.7.11.10.450
5av3KMPDeath-associated protein kinase 12.7.11.10.450
1jklANPDeath-associated protein kinase 12.7.11.10.449
3bqr4RBDeath-associated protein kinase 3/0.449
2fvdLIACyclin-dependent kinase 22.7.11.220.446
3ambVX6cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.445
3nux3NVCyclin-dependent kinase 62.7.11.220.445
4jia1K3Tyrosine-protein kinase JAK2/0.445
3gu7ADPDeath-associated protein kinase 12.7.11.10.443
3rak03ZCyclin-dependent kinase 22.7.11.220.443
3i4bZ48Glycogen synthase kinase-3 beta2.7.11.260.442
4hvi19STyrosine-protein kinase JAK32.7.10.20.441
3w2sW2REpidermal growth factor receptor2.7.10.10.440