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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3q99H4BNitric oxide synthase, brain1.14.13.39

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3q99H4BNitric oxide synthase, brain1.14.13.391.000
3q9aH4BNitric oxide synthase, brain1.14.13.390.773
3jt6H4BNitric oxide synthase, brain1.14.13.390.761
3jt3H4BNitric oxide synthase, brain1.14.13.390.727
4imuH4BNitric oxide synthase, brain1.14.13.390.712
4gqeH4BNitric oxide synthase, brain1.14.13.390.708
1zzqH4BNitric oxide synthase, brain1.14.13.390.705
3tymH4BNitric oxide synthase, brain1.14.13.390.694
1zzuH4BNitric oxide synthase, brain1.14.13.390.693
3jtaH4BNitric oxide synthase, brain1.14.13.390.690
4k5gH4BNitric oxide synthase, brain1.14.13.390.689
3jt4H4BNitric oxide synthase, brain1.14.13.390.683
4cx5H4BNitric oxide synthase, brain1.14.13.390.678
4jsfH4BNitric oxide synthase, brain1.14.13.390.677
3ufoH4BNitric oxide synthase, brain1.14.13.390.675
3ufvH4BNitric oxide synthase, brain1.14.13.390.674
2g6j7APNitric oxide synthase, brain1.14.13.390.671
4cx4H4BNitric oxide synthase, brain1.14.13.390.667
3dqrH4BNitric oxide synthase, brain1.14.13.390.660
3pneH4BNitric oxide synthase, brain1.14.13.390.654
5aglH4BNitric oxide synthase, brain1.14.13.390.649
3n5zH4BNitric oxide synthase, brain1.14.13.390.648
3n61H4BNitric oxide synthase, brain1.14.13.390.646
3jt5H4BNitric oxide synthase, brain1.14.13.390.639
3nlwH4BNitric oxide synthase, brain1.14.13.390.635
3ufsH4BNitric oxide synthase, brain1.14.13.390.633
3jt8H4BNitric oxide synthase, brain1.14.13.390.631
3nlrH4BNitric oxide synthase, brain1.14.13.390.629
3jt9H4BNitric oxide synthase, brain1.14.13.390.624
4k5dH4BNitric oxide synthase, brain1.14.13.390.623
4fvyH4BNitric oxide synthase, brain1.14.13.390.622
3fc5H4BNitric oxide synthase, brain1.14.13.390.620
3nnz59WNitric oxide synthase, brain1.14.13.390.613
2g6iHBINitric oxide synthase, brain1.14.13.390.611
5agkH4BNitric oxide synthase, brain1.14.13.390.610
1zzqDP9Nitric oxide synthase, brain1.14.13.390.606
3jt7H4BNitric oxide synthase, brain1.14.13.390.605
4jsgH4BNitric oxide synthase, brain1.14.13.390.604
3n5yXFLNitric oxide synthase, brain1.14.13.390.602
4fvxH4BNitric oxide synthase, brain1.14.13.390.601
4euxH4BNitric oxide synthase, brain1.14.13.390.595
2hx3H4BNitric oxide synthase, brain1.14.13.390.591
3tylH4BNitric oxide synthase, brain1.14.13.390.590
3b3pH4BNitric oxide synthase, brain1.14.13.390.588
5agpH4BNitric oxide synthase, brain1.14.13.390.587
1mmvH4BNitric oxide synthase, brain1.14.13.390.586
1p6kH4BNitric oxide synthase, brain1.14.13.390.586
3nlqH4BNitric oxide synthase, brain1.14.13.390.585
3nnzH4BNitric oxide synthase, brain1.14.13.390.583
4fw0H4BNitric oxide synthase, brain1.14.13.390.581
3nlvH4BNitric oxide synthase, brain1.14.13.390.580
3rqkH4BNitric oxide synthase, brain1.14.13.390.580
3b3mH4BNitric oxide synthase, brain1.14.13.390.579
3n65XFJNitric oxide synthase, brain1.14.13.390.578
1m00H4BNitric oxide synthase, brain1.14.13.390.577
3jx6H4BNitric oxide synthase, brain1.14.13.390.576
4imu1ETNitric oxide synthase, brain1.14.13.390.576
4k5fH4BNitric oxide synthase, brain1.14.13.390.575
3ufqH4BNitric oxide synthase, brain1.14.13.390.574
1zvlH4BNitric oxide synthase, brain1.14.13.390.573
3nloH4BNitric oxide synthase, brain1.14.13.390.573
3b3oH4BNitric oxide synthase, brain1.14.13.390.572
2hx4H4BNitric oxide synthase, brain1.14.13.390.570
1rs6H4BNitric oxide synthase, brain1.14.13.390.568
3nlkH4BNitric oxide synthase, brain1.14.13.390.568
3b3oJI3Nitric oxide synthase, brain1.14.13.390.566
3rqlH4BNitric oxide synthase, brain1.14.13.390.564
1p6jH4BNitric oxide synthase, brain1.14.13.390.562
3n5yH4BNitric oxide synthase, brain1.14.13.390.562
3ufwH4BNitric oxide synthase, brain1.14.13.390.562
4cx4HW9Nitric oxide synthase, brain1.14.13.390.561
1om5H4BNitric oxide synthase, brain1.14.13.390.560
1rs7H4BNitric oxide synthase, brain1.14.13.390.560
1zzrH4BNitric oxide synthase, brain1.14.13.390.558
1zzuDP1Nitric oxide synthase, brain1.14.13.390.558
3n66XFNNitric oxide synthase, brain1.14.13.390.558
3jwvH4BNitric oxide synthase, brain1.14.13.390.557
3jx3H4BNitric oxide synthase, brain1.14.13.390.557
3nlnH4BNitric oxide synthase, brain1.14.13.390.556
3nlpH4BNitric oxide synthase, brain1.14.13.390.555
4jseH4BNitric oxide synthase, brain1.14.13.390.554
3b3nH4BNitric oxide synthase, brain1.14.13.390.553
3jwtH4BNitric oxide synthase, brain1.14.13.390.552
4luxH4BNitric oxide synthase, brain1.14.13.390.552
3jwuH4BNitric oxide synthase, brain1.14.13.390.551
3svpH4BNitric oxide synthase, brain1.14.13.390.551
3n63XFNNitric oxide synthase, brain1.14.13.390.550
4d1oH4BNitric oxide synthase, endothelial1.14.13.390.550
3nlzH4BNitric oxide synthase, brain1.14.13.390.549
4jsiH4BNitric oxide synthase, brain1.14.13.390.548
4jsfQJ4Nitric oxide synthase, brain1.14.13.390.546
3nlyH4BNitric oxide synthase, brain1.14.13.390.544
3ufrH4BNitric oxide synthase, brain1.14.13.390.544
1k2uH4BNitric oxide synthase, brain1.14.13.390.543
3n5zXFMNitric oxide synthase, brain1.14.13.390.543
3pnfH4BNitric oxide synthase, brain1.14.13.390.541
3jx5H4BNitric oxide synthase, brain1.14.13.390.540
3jx4H4BNitric oxide synthase, brain1.14.13.390.539
3rqjH4BNitric oxide synthase, brain1.14.13.390.537
1zzrDP9Nitric oxide synthase, brain1.14.13.390.536
1k2tH4BNitric oxide synthase, brain1.14.13.390.535
3ufpH4BNitric oxide synthase, brain1.14.13.390.535
3nnyH4BNitric oxide synthase, brain1.14.13.390.534
3pngH4BNitric oxide synthase, brain1.14.13.390.534
2hx44HXNitric oxide synthase, brain1.14.13.390.533
3ufvHW9Nitric oxide synthase, brain1.14.13.390.533
4imwH4BNitric oxide synthase, brain1.14.13.390.533
3nljH4BNitric oxide synthase, brain1.14.13.390.532
3pne8AXNitric oxide synthase, brain1.14.13.390.532
3rqmH4BNitric oxide synthase, brain1.14.13.390.532
3ufuH4BNitric oxide synthase, brain1.14.13.390.532
3hsnH4BNitric oxide synthase, brain1.14.13.390.529
3n61XFJNitric oxide synthase, brain1.14.13.390.529
3jx2H4BNitric oxide synthase, brain1.14.13.390.527
3nosH4BNitric oxide synthase, endothelial1.14.13.390.527
4jshH4BNitric oxide synthase, brain1.14.13.390.525
4cx3H4BNitric oxide synthase, brain1.14.13.390.524
3nodH4BNitric oxide synthase, inducible1.14.13.390.522
3rqjY2BNitric oxide synthase, brain1.14.13.390.520
3svqH4BNitric oxide synthase, brain1.14.13.390.515
3n62XFJNitric oxide synthase, brain1.14.13.390.514
3n5wXFJNitric oxide synthase, brain1.14.13.390.513
3ej8H4BNitric oxide synthase, inducible1.14.13.390.512
3n60XFNNitric oxide synthase, brain1.14.13.390.512
1r35H4BNitric oxide synthase, inducible1.14.13.390.511
3n5xXFKNitric oxide synthase, brain1.14.13.390.504
1k2sH4BNitric oxide synthase, brain1.14.13.390.501
3e7gH4BNitric oxide synthase, inducible1.14.13.390.501
3ufsHW6Nitric oxide synthase, brain1.14.13.390.498
3ufwHW0Nitric oxide synthase, brain1.14.13.390.498
1dwxH4BNitric oxide synthase, inducible1.14.13.390.497
3nlv3XANitric oxide synthase, brain1.14.13.390.496
4k5fQ14Nitric oxide synthase, brain1.14.13.390.494
3jx0JI4Nitric oxide synthase, brain1.14.13.390.492
3nlqJRRNitric oxide synthase, brain1.14.13.390.492
3tym08RNitric oxide synthase, brain1.14.13.390.492
3b3pJI7Nitric oxide synthase, brain1.14.13.390.490
4jsgQ10Nitric oxide synthase, brain1.14.13.390.490
3nlw3XFNitric oxide synthase, brain1.14.13.390.489
4k5d1Q6Nitric oxide synthase, brain1.14.13.390.486
3uftH4BNitric oxide synthase, brain1.14.13.390.483
3dwjH4BNitric oxide synthase, inducible1.14.13.390.481
3nw2H4BNitric oxide synthase, inducible1.14.13.390.480
3tylAXWNitric oxide synthase, brain1.14.13.390.480
1rs6DP2Nitric oxide synthase, brain1.14.13.390.479
3e6oH4BNitric oxide synthase, inducible1.14.13.390.477
3jwsJI4Nitric oxide synthase, brain1.14.13.390.476
3ufqHW5Nitric oxide synthase, brain1.14.13.390.476
3nloJSRNitric oxide synthase, brain1.14.13.390.475
3ufoHW4Nitric oxide synthase, brain1.14.13.390.474
1p6jDP9Nitric oxide synthase, brain1.14.13.390.473
1qomH4BNitric oxide synthase, inducible1.14.13.390.473
3jx2JI4Nitric oxide synthase, brain1.14.13.390.473
3e6tH4BNitric oxide synthase, inducible1.14.13.390.472
3jx5J14Nitric oxide synthase, brain1.14.13.390.470
3rqkX2CNitric oxide synthase, brain1.14.13.390.469
4imt1EWNitric oxide synthase, brain1.14.13.390.468
3nlpJSSNitric oxide synthase, brain1.14.13.390.466
2nodH4BNitric oxide synthase, inducible1.14.13.390.465
3nlkJSSNitric oxide synthase, brain1.14.13.390.465
3nlrJRSNitric oxide synthase, brain1.14.13.390.465
3jwuJ11Nitric oxide synthase, brain1.14.13.390.463
1m8eH4BNitric oxide synthase, inducible1.14.13.390.462
3jwtJI5Nitric oxide synthase, brain1.14.13.390.462
3jx3JI5Nitric oxide synthase, brain1.14.13.390.461
3jx4J11Nitric oxide synthase, brain1.14.13.390.460
3nlz3XDNitric oxide synthase, brain1.14.13.390.458
4cx5HW8Nitric oxide synthase, brain1.14.13.390.456
4jsiQ05Nitric oxide synthase, brain1.14.13.390.456
3ufrH5WNitric oxide synthase, brain1.14.13.390.455
4cx3HW8Nitric oxide synthase, brain1.14.13.390.453
3pnf8BXNitric oxide synthase, brain1.14.13.390.452
4imw1EVNitric oxide synthase, brain1.14.13.390.451
3rqlX2DNitric oxide synthase, brain1.14.13.390.450
4k5gQ13Nitric oxide synthase, brain1.14.13.390.448
4luxQJ8Nitric oxide synthase, brain1.14.13.390.447
3nljJRRNitric oxide synthase, brain1.14.13.390.446
3png8CXNitric oxide synthase, brain1.14.13.390.446
3ufuHW8Nitric oxide synthase, brain1.14.13.390.446
3ufpH4WNitric oxide synthase, brain1.14.13.390.445
4euxHW1Nitric oxide synthase, brain1.14.13.390.445
3nny59RNitric oxide synthase, brain1.14.13.390.441
4k5e1Q7Nitric oxide synthase, brain1.14.13.390.441