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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3q7dNPXProstaglandin G/H synthase 21.14.99.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3q7dNPXProstaglandin G/H synthase 21.14.99.11.000
4coxIMNProstaglandin G/H synthase 21.14.99.10.644
3rr3FLRProstaglandin G/H synthase 21.14.99.10.630
4fm5DF0Prostaglandin G/H synthase 21.14.99.10.590
4ph9IBPProstaglandin G/H synthase 21.14.99.10.547
3mqe416Prostaglandin G/H synthase 21.14.99.10.528
3ntgD72Prostaglandin G/H synthase 21.14.99.10.528
5ikrID8Prostaglandin G/H synthase 21.14.99.10.528
4rrxLURProstaglandin G/H synthase 21.14.99.10.525
3pghFLPProstaglandin G/H synthase 21.14.99.10.490
4m10ICDProstaglandin G/H synthase 21.14.99.10.483
4rrwLURProstaglandin G/H synthase 21.14.99.10.483
4rrzLURProstaglandin G/H synthase 21.14.99.10.483
3n8wFLPProstaglandin G/H synthase 11.14.99.10.462