sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3pke | Y10 | Methionine aminopeptidase 2 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 3pke | Y10 | Methionine aminopeptidase 2 | / | 1.000 | |
| 3iu7 | FCD | Methionine aminopeptidase 2 | / | 0.718 | |
| 3pkb | Y16 | Methionine aminopeptidase 2 | / | 0.630 | |
| 3pka | Y02 | Methionine aminopeptidase 2 | / | 0.628 | |
| 3pkd | Y10 | Methionine aminopeptidase 2 | / | 0.619 | |
| 2evc | FC3 | Methionine aminopeptidase | / | 0.605 | |
| 2evm | FC2 | Methionine aminopeptidase | / | 0.592 | |
| 4iks | TFD | Methionine aminopeptidase 1 | / | 0.580 | |
| 2q94 | A04 | Methionine aminopeptidase | / | 0.576 | |
| 2p99 | YE6 | Methionine aminopeptidase | / | 0.572 | |
| 3iu8 | T03 | Methionine aminopeptidase 2 | / | 0.565 | |
| 4flk | Y10 | Methionine aminopeptidase 1 | / | 0.557 | |
| 4fll | YZ6 | Methionine aminopeptidase 1 | / | 0.557 | |
| 4ikt | TFV | Methionine aminopeptidase 1 | / | 0.556 | |
| 2g6p | HM2 | Methionine aminopeptidase 1 | / | 0.550 | |
| 2q92 | B23 | Methionine aminopeptidase | / | 0.550 | |
| 2gg8 | U15 | Methionine aminopeptidase | / | 0.547 | |
| 2nq7 | HM5 | Methionine aminopeptidase 1 | / | 0.546 | |
| 3iu9 | T07 | Methionine aminopeptidase 2 | / | 0.537 | |
| 2gg0 | U11 | Methionine aminopeptidase | / | 0.530 | |
| 4ikr | PVP | Methionine aminopeptidase 1 | / | 0.528 | |
| 4iku | SHX | Methionine aminopeptidase 1 | / | 0.528 | |
| 2ggb | U17 | Methionine aminopeptidase | / | 0.524 | |
| 4fli | Y16 | Methionine aminopeptidase 1 | / | 0.523 | |
| 2gg3 | U13 | Methionine aminopeptidase | / | 0.515 | |
| 4hxx | 1AY | Methionine aminopeptidase 1 | / | 0.513 | |
| 1c23 | MPH | Methionine aminopeptidase | / | 0.504 | |
| 1r5g | AO1 | Methionine aminopeptidase 2 | / | 0.499 | |
| 2p98 | YE7 | Methionine aminopeptidase | / | 0.496 | |
| 4flj | Y08 | Methionine aminopeptidase 1 | / | 0.492 | |
| 1qzy | TDE | Methionine aminopeptidase 2 | / | 0.490 | |
| 1xnz | FCD | Methionine aminopeptidase | / | 0.490 | |
| 1r5h | AO2 | Methionine aminopeptidase 2 | / | 0.482 | |
| 2gg9 | U16 | Methionine aminopeptidase | / | 0.482 | |
| 2q93 | B21 | Methionine aminopeptidase | / | 0.482 | |
| 2gg2 | U12 | Methionine aminopeptidase | / | 0.481 | |
| 2q96 | A18 | Methionine aminopeptidase | / | 0.471 | |
| 2xuq | TZ4 | Acetylcholinesterase | 3.1.1.7 | 0.468 | |
| 3d27 | W29 | Methionine aminopeptidase | / | 0.468 | |
| 1x1b | SAH | C-20 methyltransferase | / | 0.466 | |
| 3pkc | Y08 | Methionine aminopeptidase 2 | / | 0.461 | |
| 2j3q | TFL | Acetylcholinesterase | 3.1.1.7 | 0.458 | |
| 2jf0 | HBP | Acetylcholinesterase | 3.1.1.7 | 0.455 | |
| 1q83 | TZ5 | Acetylcholinesterase | 3.1.1.7 | 0.451 | |
| 1odc | A8B | Acetylcholinesterase | 3.1.1.7 | 0.449 | |
| 1q84 | TZ4 | Acetylcholinesterase | 3.1.1.7 | 0.449 | |
| 3sxj | SAM | Putative methyltransferase | / | 0.449 | |
| 1eve | E20 | Acetylcholinesterase | 3.1.1.7 | 0.448 | |
| 2oaz | I96 | Methionine aminopeptidase 2 | / | 0.447 | |
| 4ey7 | E20 | Acetylcholinesterase | 3.1.1.7 | 0.447 | |
| 2wzy | SQX | Soluble acetylcholine receptor | / | 0.444 | |
| 1yw8 | A75 | Methionine aminopeptidase 2 | / | 0.443 | |
| 3t0i | SAH | Putative methyltransferase | / | 0.441 | |
| 2ea2 | F77 | Methionine aminopeptidase 2 | / | 0.440 |