sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3p9k	CIY	Caffeic acid O-methyltransferase

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
3p9k	CIY	Caffeic acid O-methyltransferase	/	1.000
2wsa	646	Glycylpeptide N-tetradecanoyltransferase	/	0.460
3pqb	VGP	Putative oxidoreductase	/	0.458
1ia4	TQ6	Dihydrofolate reductase	1.5.1.3	0.449
1uzw	CDH	Isopenicillin N synthase	1.21.3.1	0.449
4a30	QMI	Glycylpeptide N-tetradecanoyltransferase	/	0.447
2z3u	CRR	Cytochrome P450	/	0.445
4geb	0LD	Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial	2.6.1.39	0.444
2bu9	HFV	Isopenicillin N synthase	1.21.3.1	0.443
3byz	H11	Corticosteroid 11-beta-dehydrogenase isozyme 1	1.1.1.146	0.442
2vbd	V10	Isopenicillin N synthase	1.21.3.1	0.441
3vf6	0H6	Glucokinase	2.7.1.2	0.441
3q3c	NAD	NAD-dependent L-serine dehydrogenase	/	0.440
4kwh	NAP	Reductase homolog	/	0.440