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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3p97SAMGenome polyprotein2.1.1.56

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3p97SAMGenome polyprotein2.1.1.561.000
4ctjSAMGenome polyprotein/0.647
3p8zSAHGenome polyprotein2.1.1.560.602
5jjrSAHGenome polyprotein/0.596
5jjsSAHGenome polyprotein/0.589
2pxaSAHGenome polyprotein2.7.7.480.583
4k6mSAHGenome polyprotein/0.583
3eluSAMMethyltransferase/0.570
3eldSFGMethyltransferase/0.567
3p8z36AGenome polyprotein2.1.1.560.563
2px5SAHGenome polyprotein2.7.7.480.560
2xbmSAHGenome polyprotein/0.555
3evcSAHGenome polyprotein2.1.1.560.553
3elySAHMethyltransferase/0.547
4ctkSAMGenome polyprotein/0.523
2px2SAHGenome polyprotein2.7.7.480.516
2wa2SAMGenome polyprotein/0.496
2oxtSAMGenome polyprotein/0.485
2p3qSAHGenome polyprotein/0.452
3evgSAHGenome polyprotein2.1.1.560.452
5dtoSAHGenome polyprotein/0.443