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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3p82FMNPentaerythritol tetranitrate reductase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3p82FMNPentaerythritol tetranitrate reductase/1.000
3p74FMNPentaerythritol tetranitrate reductase/0.641
1h50FMNPentaerythritol tetranitrate reductase/0.612
3f03FMNPentaerythritol tetranitrate reductase/0.606
1vyrFMNPentaerythritol tetranitrate reductase/0.584
1h63FMNPentaerythritol tetranitrate reductase/0.577
2abbFMNPentaerythritol tetranitrate reductase/0.573
3p8iFMNPentaerythritol tetranitrate reductase/0.558
1h51FMNPentaerythritol tetranitrate reductase/0.498
3p8jFMNPentaerythritol tetranitrate reductase/0.498
3p84FMNPentaerythritol tetranitrate reductase/0.491
4jicFMNGTN Reductase/0.483
3p62FMNPentaerythritol tetranitrate reductase/0.481
1icsFMN12-oxophytodienoate reductase 11.3.1.420.474
3p67FMNPentaerythritol tetranitrate reductase/0.472
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.460
4tmbFMNOld yellow enzyme/0.454
1icpFMN12-oxophytodienoate reductase 11.3.1.420.453
2q3rFMN12-oxophytodienoate reductase 11.3.1.420.450
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.450
1bwlFMNNADPH dehydrogenase 11.6.99.10.449
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.449
4e2bFMNDehydrogenase/0.449
1icqFMN12-oxophytodienoate reductase 11.3.1.420.448
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.448
4e2dFMNDehydrogenase/0.446
3gkaFMNN-ethylmaleimide reductase/0.444
3atzFMNProstaglandin F2a synthase/0.443