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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3p62FMNPentaerythritol tetranitrate reductase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3p62FMNPentaerythritol tetranitrate reductase/1.000
2abbFMNPentaerythritol tetranitrate reductase/0.667
3p74FMNPentaerythritol tetranitrate reductase/0.651
3p67FMNPentaerythritol tetranitrate reductase/0.633
3f03FMNPentaerythritol tetranitrate reductase/0.623
1h50FMNPentaerythritol tetranitrate reductase/0.619
1h63FMNPentaerythritol tetranitrate reductase/0.591
1vyrFMNPentaerythritol tetranitrate reductase/0.582
1h51FMNPentaerythritol tetranitrate reductase/0.553
3p8jFMNPentaerythritol tetranitrate reductase/0.553
3p8iFMNPentaerythritol tetranitrate reductase/0.520
3p84FMNPentaerythritol tetranitrate reductase/0.488
3p82FMNPentaerythritol tetranitrate reductase/0.485
4jicFMNGTN Reductase/0.483
1icsFMN12-oxophytodienoate reductase 11.3.1.420.482
1icpFMN12-oxophytodienoate reductase 11.3.1.420.476
3gkaFMNN-ethylmaleimide reductase/0.455
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.452
4e2bFMNDehydrogenase/0.445
1icqFMN12-oxophytodienoate reductase 11.3.1.420.443
3atzFMNProstaglandin F2a synthase/0.442
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.441